Genes within 1Mb (chr1:42422373:T:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066185 ZMYND12 -33880 eQTL 1.73e-38 -0.535 0.0394 0.00238 0.00254 0.167
ENSG00000127125 PPCS -33744 eQTL 6.16e-03 -0.0562 0.0205 0.0 0.0 0.167
ENSG00000164008 C1orf50 -344876 eQTL 3.64e-02 -0.0656 0.0313 0.0 0.0 0.167
ENSG00000171960 PPIH -236050 eQTL 1.33e-02 0.0391 0.0158 0.00147 0.0 0.167
ENSG00000177868 SVBP -395024 eQTL 3.45e-02 -0.056 0.0264 0.0 0.0 0.167
ENSG00000186409 CCDC30 -40957 eQTL 6.43e-05 -0.085 0.0212 0.0 0.0 0.167
ENSG00000228192 AL512353.1 -424049 eQTL 9.22e-03 0.147 0.0563 0.0 0.0 0.167


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000065978 \N -260045 4.6e-06 9.31e-06 7.57e-07 3.49e-06 1.38e-06 1.74e-06 9.78e-06 9.98e-07 4.76e-06 2.88e-06 6.45e-06 3.25e-06 1.12e-05 2.33e-06 1.4e-06 3.78e-06 3.75e-06 3.77e-06 1.57e-06 1.39e-06 2.85e-06 5.15e-06 9.7e-06 1.68e-06 9.2e-06 2.27e-06 2.57e-06 1.67e-06 9.57e-06 4.67e-06 3.01e-06 5.58e-07 5.47e-07 1.62e-06 1.95e-06 1.17e-06 1.27e-06 3.91e-07 8.39e-07 3.99e-07 2.08e-07 7.97e-06 7.85e-07 1.89e-07 3.63e-07 1.19e-06 1.14e-06 6.45e-07 5.97e-07
ENSG00000066185 ZMYND12 -33880 1.65e-05 2.3e-05 2.95e-06 1.15e-05 2.98e-06 7.88e-06 5.2e-05 3.25e-06 1.99e-05 8.5e-06 2.55e-05 8.87e-06 3.88e-05 7.53e-06 5.1e-06 9.71e-06 1.27e-05 1.58e-05 3.64e-06 4.04e-06 8.78e-06 1.63e-05 3.86e-05 5.33e-06 2.96e-05 5.37e-06 7.92e-06 7.09e-06 3.53e-05 1.54e-05 1.19e-05 9.73e-07 1.49e-06 3.91e-06 7.28e-06 3.9e-06 1.71e-06 2e-06 2.2e-06 1.4e-06 9.41e-07 2.87e-05 2.68e-06 1.64e-07 1.03e-06 2.14e-06 2.13e-06 7.23e-07 8.26e-07
ENSG00000127125 PPCS -33744 1.67e-05 2.3e-05 2.95e-06 1.15e-05 2.98e-06 7.88e-06 5.2e-05 3.25e-06 1.99e-05 8.5e-06 2.55e-05 8.87e-06 3.88e-05 7.53e-06 5.1e-06 9.71e-06 1.29e-05 1.58e-05 3.64e-06 4.04e-06 8.78e-06 1.63e-05 3.86e-05 5.39e-06 2.96e-05 5.37e-06 7.92e-06 7.23e-06 3.53e-05 1.54e-05 1.19e-05 9.73e-07 1.49e-06 3.91e-06 7.28e-06 3.9e-06 1.71e-06 1.99e-06 2.2e-06 1.4e-06 9.41e-07 2.87e-05 2.68e-06 1.64e-07 1.03e-06 2.14e-06 2.13e-06 7.23e-07 8.26e-07
ENSG00000171960 PPIH -236050 4.85e-06 9.64e-06 1.31e-06 4.03e-06 1.63e-06 1.53e-06 1.09e-05 1.11e-06 5.94e-06 3.08e-06 7.9e-06 2.92e-06 1.15e-05 3.23e-06 1.76e-06 4.67e-06 4.44e-06 4.11e-06 1.52e-06 1.72e-06 3.4e-06 6.58e-06 1.19e-05 2.02e-06 1.09e-05 2.58e-06 2.31e-06 1.78e-06 1.16e-05 6.08e-06 3.74e-06 4.34e-07 6.32e-07 1.81e-06 2.22e-06 1.3e-06 1.35e-06 4.74e-07 9.38e-07 3.64e-07 3.75e-07 8.16e-06 9.9e-07 1.93e-07 3.58e-07 1.12e-06 9.77e-07 6.83e-07 5.25e-07
ENSG00000177868 SVBP -395024 2.02e-06 4.55e-06 4.51e-07 1.96e-06 5.07e-07 7.77e-07 2.93e-06 3.95e-07 2.13e-06 7.3e-07 2.41e-06 1.38e-06 5.88e-06 1.41e-06 9.69e-07 1.86e-06 2.07e-06 2.09e-06 7.13e-07 1.35e-06 1.56e-06 2.9e-06 4.6e-06 9.56e-07 4.27e-06 1.16e-06 1.01e-06 1.44e-06 4.32e-06 1.93e-06 1.98e-06 2.86e-07 4.16e-07 1.31e-06 1.63e-06 9.71e-07 8.96e-07 3.37e-07 1.33e-06 2.76e-07 2.79e-07 3.56e-06 5.88e-07 1.41e-07 1.9e-07 3.28e-07 8.08e-07 2.11e-07 2.72e-07
ENSG00000186409 CCDC30 -40957 1.54e-05 2.16e-05 2.64e-06 1.11e-05 2.54e-06 7.28e-06 5.07e-05 2.96e-06 1.87e-05 7.94e-06 2.38e-05 8.35e-06 3.74e-05 7.03e-06 4.91e-06 9.23e-06 1.19e-05 1.51e-05 3.52e-06 3.59e-06 8.37e-06 1.47e-05 3.81e-05 5.15e-06 2.84e-05 5.34e-06 7.52e-06 6.3e-06 3.51e-05 1.48e-05 1.15e-05 1.03e-06 1.3e-06 3.64e-06 6.8e-06 3.76e-06 1.78e-06 1.99e-06 2.06e-06 1.27e-06 9.75e-07 2.73e-05 2.64e-06 1.52e-07 9.15e-07 2.04e-06 2.04e-06 6.86e-07 6.76e-07