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Genes within 1Mb (chr1:41341266:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 99112 sc-eQTL 7.60e-01 0.0641 0.209 0.051 CD8_TCM L2
ENSG00000066136 NFYC 649618 sc-eQTL 8.10e-01 0.0505 0.209 0.051 CD8_TCM L2
ENSG00000084070 SMAP2 996416 sc-eQTL 8.63e-01 -0.0218 0.126 0.051 CD8_TCM L2
ENSG00000117010 ZNF684 809693 sc-eQTL 4.17e-01 -0.161 0.198 0.051 CD8_TCM L2
ENSG00000127124 HIVEP3 -694659 sc-eQTL 7.83e-01 -0.0544 0.197 0.051 CD8_TCM L2
ENSG00000164002 EXO5 832525 sc-eQTL 8.36e-01 -0.042 0.202 0.051 CD8_TCM L2
ENSG00000171793 CTPS1 361578 sc-eQTL 4.21e-01 -0.146 0.181 0.051 CD8_TCM L2
ENSG00000179862 CITED4 478903 sc-eQTL 6.79e-01 -0.064 0.155 0.051 CD8_TCM L2
ENSG00000187801 ZFP69B 891164 sc-eQTL 9.40e-01 -0.0142 0.191 0.051 CD8_TCM L2
ENSG00000187815 ZFP69 863976 sc-eQTL 2.84e-01 0.206 0.192 0.051 CD8_TCM L2
ENSG00000198815 FOXJ3 -994611 sc-eQTL 3.93e-01 0.158 0.184 0.051 CD8_TCM L2
ENSG00000272145 NFYC-AS1 649200 sc-eQTL 8.83e-01 0.0281 0.19 0.051 CD8_TCM L2
ENSG00000010803 SCMH1 99112 sc-eQTL 1.95e-01 -0.256 0.197 0.051 cDC L2
ENSG00000066136 NFYC 649618 sc-eQTL 4.83e-01 -0.149 0.211 0.051 cDC L2
ENSG00000084070 SMAP2 996416 sc-eQTL 2.38e-01 -0.181 0.153 0.051 cDC L2
ENSG00000117010 ZNF684 809693 sc-eQTL 7.50e-01 0.0554 0.173 0.051 cDC L2
ENSG00000117016 RIMS3 675584 sc-eQTL 4.41e-01 -0.109 0.141 0.051 cDC L2
ENSG00000127124 HIVEP3 -694659 sc-eQTL 4.94e-01 -0.123 0.179 0.051 cDC L2
ENSG00000164002 EXO5 832525 sc-eQTL 9.60e-01 -0.00891 0.176 0.051 cDC L2
ENSG00000171793 CTPS1 361578 sc-eQTL 8.77e-01 -0.0298 0.192 0.051 cDC L2
ENSG00000179862 CITED4 478903 sc-eQTL 7.90e-01 -0.0461 0.173 0.051 cDC L2
ENSG00000187815 ZFP69 863976 sc-eQTL 7.65e-01 -0.0534 0.178 0.051 cDC L2
ENSG00000198815 FOXJ3 -994611 sc-eQTL 2.37e-01 -0.234 0.197 0.051 cDC L2
ENSG00000272145 NFYC-AS1 649200 sc-eQTL 1.62e-01 -0.256 0.183 0.051 cDC L2
ENSG00000010803 SCMH1 99112 sc-eQTL 4.89e-01 -0.154 0.223 0.052 gdT L2
ENSG00000066136 NFYC 649618 sc-eQTL 8.23e-01 0.0554 0.247 0.052 gdT L2
ENSG00000084070 SMAP2 996416 sc-eQTL 2.03e-01 -0.203 0.159 0.052 gdT L2
ENSG00000117010 ZNF684 809693 sc-eQTL 2.89e-01 -0.235 0.221 0.052 gdT L2
ENSG00000127124 HIVEP3 -694659 sc-eQTL 4.30e-01 0.173 0.219 0.052 gdT L2
ENSG00000164002 EXO5 832525 sc-eQTL 7.68e-01 -0.0666 0.225 0.052 gdT L2
ENSG00000171793 CTPS1 361578 sc-eQTL 7.75e-01 -0.0599 0.21 0.052 gdT L2
ENSG00000179862 CITED4 478903 sc-eQTL 3.67e-01 0.194 0.214 0.052 gdT L2
ENSG00000187801 ZFP69B 891164 sc-eQTL 8.03e-01 0.0526 0.21 0.052 gdT L2
ENSG00000187815 ZFP69 863976 sc-eQTL 2.55e-02 -0.501 0.222 0.052 gdT L2
ENSG00000198815 FOXJ3 -994611 sc-eQTL 3.90e-01 -0.187 0.216 0.052 gdT L2
ENSG00000272145 NFYC-AS1 649200 sc-eQTL 9.28e-01 -0.0201 0.221 0.052 gdT L2
ENSG00000010803 SCMH1 99112 sc-eQTL 7.62e-01 0.0569 0.187 0.054 pDC L2
ENSG00000066136 NFYC 649618 sc-eQTL 3.06e-01 -0.217 0.212 0.054 pDC L2
ENSG00000084070 SMAP2 996416 sc-eQTL 6.60e-01 -0.065 0.147 0.054 pDC L2
ENSG00000117010 ZNF684 809693 sc-eQTL 8.41e-01 0.0391 0.195 0.054 pDC L2
ENSG00000117016 RIMS3 675584 sc-eQTL 6.14e-01 -0.088 0.174 0.054 pDC L2
ENSG00000127124 HIVEP3 -694659 sc-eQTL 6.45e-02 0.383 0.205 0.054 pDC L2
ENSG00000164002 EXO5 832525 sc-eQTL 4.70e-01 0.125 0.173 0.054 pDC L2
ENSG00000171793 CTPS1 361578 sc-eQTL 8.23e-01 -0.0377 0.169 0.054 pDC L2
ENSG00000179862 CITED4 478903 sc-eQTL 5.77e-01 -0.0941 0.168 0.054 pDC L2
ENSG00000187815 ZFP69 863976 sc-eQTL 6.33e-01 0.0855 0.179 0.054 pDC L2
ENSG00000198815 FOXJ3 -994611 sc-eQTL 4.30e-01 0.18 0.228 0.054 pDC L2
ENSG00000272145 NFYC-AS1 649200 sc-eQTL 2.76e-01 0.198 0.181 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000171790 SLFNL1 318029 eQTL 0.0161 -0.171 0.0708 0.0 0.0 0.0373
ENSG00000171793 CTPS1 361931 eQTL 0.0381 -0.0997 0.048 0.0 0.0 0.0373
ENSG00000179862 CITED4 478900 eQTL 0.00231 0.212 0.0693 0.0 0.0 0.0373
ENSG00000187815 ZFP69 863976 eQTL 0.0162 0.129 0.0536 0.0014 0.0 0.0373
ENSG00000238287 AL603839.3 832605 eQTL 0.037 0.226 0.108 0.0 0.0 0.0373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000171793 CTPS1 361931 1.87e-06 5.05e-06 6.63e-07 1.85e-06 3.5e-07 5.87e-07 1.25e-06 3.22e-07 1.75e-06 6.36e-07 2.49e-06 1.3e-06 2.9e-06 2.04e-06 8.27e-07 9.52e-07 1e-06 1.09e-06 8.2e-07 6.97e-07 7.79e-07 1.83e-06 1.09e-06 5.59e-07 2.52e-06 4.28e-07 1.03e-06 1.75e-06 1.62e-06 1.32e-06 1.74e-06 5.77e-08 1.95e-07 1.22e-06 1.23e-06 6.23e-07 7.21e-07 1.68e-07 2.19e-07 2.48e-07 8.15e-08 4.34e-06 1.3e-06 5.77e-09 1.79e-07 3.44e-07 1.77e-07 7.75e-08 5.65e-08
ENSG00000187801 \N 891159 3.21e-07 5.67e-07 1.5e-07 2.28e-07 9.25e-08 8.45e-08 2.16e-07 5.2e-08 1.45e-07 4.94e-08 2.84e-07 1.23e-07 2.29e-07 1.41e-07 6.53e-08 7.23e-08 4.01e-08 1.51e-07 6.75e-08 4.07e-08 1.21e-07 1.42e-07 1.5e-07 4.05e-08 2.17e-07 1.16e-07 1.13e-07 1.69e-07 1.22e-07 1.24e-07 1.27e-07 3.88e-08 3.16e-08 9.3e-08 7.44e-08 2.68e-08 5.7e-08 9.49e-08 7.52e-08 3.18e-08 3.25e-08 5.44e-07 5.09e-08 3.37e-08 7.79e-08 1.92e-08 1.27e-07 4.14e-09 4.74e-08