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Genes within 1Mb (chr1:40821062:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -421092 sc-eQTL 7.18e-01 0.0798 0.221 0.05 CD8_TEM L2
ENSG00000043514 TRIT1 937551 sc-eQTL 4.24e-01 0.175 0.218 0.05 CD8_TEM L2
ENSG00000066136 NFYC 129414 sc-eQTL 6.55e-01 -0.1 0.225 0.05 CD8_TEM L2
ENSG00000084070 SMAP2 476212 sc-eQTL 9.44e-01 -0.011 0.157 0.05 CD8_TEM L2
ENSG00000084073 ZMPSTE24 562826 sc-eQTL 2.87e-01 0.237 0.222 0.05 CD8_TEM L2
ENSG00000117000 RLF 659675 sc-eQTL 5.34e-01 -0.113 0.182 0.05 CD8_TEM L2
ENSG00000117010 ZNF684 289489 sc-eQTL 3.84e-01 -0.189 0.216 0.05 CD8_TEM L2
ENSG00000131236 CAP1 780829 sc-eQTL 9.47e-01 -0.0101 0.151 0.05 CD8_TEM L2
ENSG00000131238 PPT1 723335 sc-eQTL 1.13e-01 -0.356 0.224 0.05 CD8_TEM L2
ENSG00000164002 EXO5 312321 sc-eQTL 6.30e-01 -0.102 0.21 0.05 CD8_TEM L2
ENSG00000171793 CTPS1 -158626 sc-eQTL 7.94e-01 0.0522 0.2 0.05 CD8_TEM L2
ENSG00000179862 CITED4 -41301 sc-eQTL 2.85e-01 0.217 0.203 0.05 CD8_TEM L2
ENSG00000187801 ZFP69B 370960 sc-eQTL 1.42e-01 -0.289 0.196 0.05 CD8_TEM L2
ENSG00000187815 ZFP69 343772 sc-eQTL 2.51e-02 0.477 0.211 0.05 CD8_TEM L2
ENSG00000259943 AL050341.2 563095 sc-eQTL 9.30e-01 0.0191 0.217 0.05 CD8_TEM L2
ENSG00000272145 NFYC-AS1 128996 sc-eQTL 7.97e-01 0.0544 0.211 0.05 CD8_TEM L2
ENSG00000010803 SCMH1 -421092 sc-eQTL 9.87e-01 0.005 0.302 0.056 PB L2
ENSG00000043514 TRIT1 937551 sc-eQTL 2.61e-01 -0.304 0.269 0.056 PB L2
ENSG00000049089 COL9A2 503249 sc-eQTL 5.05e-01 0.159 0.238 0.056 PB L2
ENSG00000066136 NFYC 129414 sc-eQTL 9.60e-01 -0.0131 0.259 0.056 PB L2
ENSG00000084070 SMAP2 476212 sc-eQTL 1.95e-02 0.435 0.183 0.056 PB L2
ENSG00000084073 ZMPSTE24 562826 sc-eQTL 1.11e-01 -0.351 0.218 0.056 PB L2
ENSG00000117000 RLF 659675 sc-eQTL 8.33e-01 -0.0577 0.273 0.056 PB L2
ENSG00000117010 ZNF684 289489 sc-eQTL 5.98e-01 0.12 0.227 0.056 PB L2
ENSG00000131236 CAP1 780829 sc-eQTL 8.82e-01 0.0339 0.229 0.056 PB L2
ENSG00000131238 PPT1 723335 sc-eQTL 4.54e-01 -0.188 0.25 0.056 PB L2
ENSG00000164002 EXO5 312321 sc-eQTL 6.24e-01 0.123 0.25 0.056 PB L2
ENSG00000171793 CTPS1 -158626 sc-eQTL 4.56e-01 0.197 0.263 0.056 PB L2
ENSG00000179862 CITED4 -41301 sc-eQTL 9.69e-01 -0.00896 0.233 0.056 PB L2
ENSG00000187815 ZFP69 343772 sc-eQTL 8.73e-02 0.418 0.243 0.056 PB L2
ENSG00000259943 AL050341.2 563095 sc-eQTL 6.07e-01 0.134 0.259 0.056 PB L2
ENSG00000272145 NFYC-AS1 128996 sc-eQTL 9.67e-01 0.0102 0.244 0.056 PB L2
ENSG00000010803 SCMH1 -421092 sc-eQTL 5.23e-01 -0.128 0.199 0.05 Pro_T L2
ENSG00000043514 TRIT1 937551 sc-eQTL 4.12e-01 -0.17 0.207 0.05 Pro_T L2
ENSG00000066136 NFYC 129414 sc-eQTL 5.92e-01 0.103 0.191 0.05 Pro_T L2
ENSG00000084070 SMAP2 476212 sc-eQTL 5.79e-02 0.311 0.163 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 562826 sc-eQTL 8.23e-01 -0.0365 0.163 0.05 Pro_T L2
ENSG00000117000 RLF 659675 sc-eQTL 9.29e-01 -0.0177 0.198 0.05 Pro_T L2
ENSG00000117010 ZNF684 289489 sc-eQTL 3.45e-01 0.186 0.197 0.05 Pro_T L2
ENSG00000131236 CAP1 780829 sc-eQTL 4.32e-01 0.125 0.158 0.05 Pro_T L2
ENSG00000131238 PPT1 723335 sc-eQTL 9.21e-01 0.0178 0.178 0.05 Pro_T L2
ENSG00000164002 EXO5 312321 sc-eQTL 2.22e-01 0.258 0.21 0.05 Pro_T L2
ENSG00000168389 MFSD2A 865950 sc-eQTL 2.04e-03 0.462 0.148 0.05 Pro_T L2
ENSG00000171793 CTPS1 -158626 sc-eQTL 9.34e-01 -0.0154 0.187 0.05 Pro_T L2
ENSG00000179862 CITED4 -41301 sc-eQTL 5.80e-01 0.0976 0.176 0.05 Pro_T L2
ENSG00000187801 ZFP69B 370960 sc-eQTL 1.81e-01 0.233 0.174 0.05 Pro_T L2
ENSG00000187815 ZFP69 343772 sc-eQTL 7.15e-01 -0.0728 0.199 0.05 Pro_T L2
ENSG00000259943 AL050341.2 563095 sc-eQTL 1.13e-01 -0.319 0.2 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 128996 sc-eQTL 9.75e-02 0.322 0.194 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117013 KCNQ4 37275 eQTL 1.09e-02 -0.217 0.0852 0.0 0.0 0.0437
ENSG00000187815 ZFP69 343772 eQTL 0.0266 -0.113 0.0508 0.0 0.0 0.0437
ENSG00000260920 AL031985.3 356743 eQTL 0.00565 -0.164 0.0592 0.0 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000171790 \N -202175 2.76e-07 1.25e-07 6.57e-08 1.78e-07 1.02e-07 9.71e-08 1.41e-07 5.29e-08 1.37e-07 4.23e-08 1.63e-07 7.49e-08 1.26e-07 6.21e-08 4.77e-08 8.01e-08 5.1e-08 1.14e-07 5.22e-08 2.88e-08 1.03e-07 1.28e-07 1.32e-07 5.19e-08 1.31e-07 1.13e-07 1.13e-07 8.45e-08 9.88e-08 1.1e-07 9.75e-08 3.29e-08 2.75e-08 8.26e-08 8.98e-08 4.14e-08 4.7e-08 8e-08 8.39e-08 3.96e-08 3.31e-08 1.48e-07 4.51e-08 0.0 1.15e-07 1.78e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000171793 \N -158273 6.09e-07 1.92e-07 3.03e-07 1.89e-07 9.65e-08 8.45e-08 1.73e-07 5.29e-08 1.44e-07 4.24e-08 1.54e-07 7.6e-08 1.45e-07 6.76e-08 4.84e-08 7.36e-08 3.94e-08 1.4e-07 5.36e-08 3.29e-08 1.04e-07 1.26e-07 1.58e-07 4.82e-08 1.55e-07 1.14e-07 1.08e-07 9.15e-08 1.2e-07 1.1e-07 9.91e-08 3.29e-08 2.74e-08 8.65e-08 3.51e-08 4.07e-08 4.95e-08 8.48e-08 8.44e-08 3.87e-08 3.71e-08 4.55e-07 3.91e-08 2.02e-08 1.12e-07 1.68e-08 1.46e-07 4.96e-09 4.72e-08
ENSG00000187815 ZFP69 343772 2.56e-07 1.16e-07 3.34e-08 1.66e-07 1.03e-07 9.14e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.21e-08 1.03e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.42e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08