Genes within 1Mb (chr1:40650664:C:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -41025 eQTL 2.61e-07 0.0559 0.0108 0.0 0.0 0.203
ENSG00000116983 HPCAL4 959179 eQTL 4.56e-02 -0.0355 0.0177 0.0 0.0 0.203
ENSG00000116985 BMP8B 861799 eQTL 3.65e-02 -0.0723 0.0345 0.0 0.0 0.203
ENSG00000117000 RLF 489277 eQTL 1.93e-02 0.0325 0.0139 0.0 0.0 0.203
ENSG00000117016 RIMS3 -15018 eQTL 3.37e-04 0.129 0.0358 0.00122 0.00358 0.203
ENSG00000164002 EXO5 141923 eQTL 2.84e-10 -0.161 0.0253 0.0 0.0 0.203
ENSG00000171790 SLFNL1 -372573 eQTL 7.30e-03 -0.0893 0.0332 0.0 0.0 0.203
ENSG00000187801 ZFP69B 200557 eQTL 1.79e-03 -0.101 0.0324 0.0 0.0 0.203
ENSG00000204060 FOXO6 -711258 eQTL 2.28e-02 -0.0617 0.0271 0.0 0.0 0.203
ENSG00000238287 AL603839.3 142003 eQTL 1.53e-23 0.497 0.0483 0.0 0.0 0.203
ENSG00000259943 AL050341.2 392697 eQTL 7.28e-03 -0.0637 0.0237 0.0 0.0 0.203
ENSG00000260920 AL031985.3 186345 eQTL 6.53e-03 -0.0801 0.0294 0.0 0.0 0.203
ENSG00000272145 NFYC-AS1 -41402 eQTL 3.99e-02 -0.085 0.0413 0.0 0.0 0.203


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 \N 333378 1.28e-06 9.53e-07 3.31e-07 5.88e-07 3.4e-07 4.7e-07 1.16e-06 3.31e-07 1.15e-06 4.03e-07 1.41e-06 6.03e-07 1.83e-06 2.54e-07 4.31e-07 8.27e-07 7.87e-07 5.82e-07 6.96e-07 6.7e-07 5.8e-07 1.17e-06 8.27e-07 6.06e-07 1.96e-06 3.79e-07 7.31e-07 7.22e-07 1.18e-06 1.2e-06 5.79e-07 1.53e-07 2.13e-07 5.39e-07 4.4e-07 4.47e-07 5.12e-07 2.21e-07 2.94e-07 9.03e-08 2.93e-07 1.43e-06 6.21e-08 1.38e-07 1.69e-07 1.11e-07 2.36e-07 5.39e-08 1.12e-07
ENSG00000066136 NFYC -41025 1.4e-05 1.38e-05 2.86e-06 8.87e-06 3.07e-06 7.28e-06 1.88e-05 3.17e-06 1.37e-05 7.46e-06 1.88e-05 7.33e-06 2.49e-05 5.36e-06 4.5e-06 9.24e-06 8.06e-06 1.32e-05 4.12e-06 4.13e-06 8.04e-06 1.35e-05 1.42e-05 4.74e-06 2.54e-05 5.33e-06 7.54e-06 6.83e-06 1.62e-05 1.38e-05 8.88e-06 1.19e-06 1.55e-06 4.49e-06 6.62e-06 3.77e-06 2.27e-06 2.72e-06 3.15e-06 2.05e-06 1.73e-06 1.74e-05 2.36e-06 4.43e-07 1.97e-06 2.58e-06 2.95e-06 1.35e-06 1.02e-06
ENSG00000116983 HPCAL4 959179 2.74e-07 1.3e-07 5.03e-08 1.81e-07 1.01e-07 9.91e-08 1.61e-07 5.53e-08 1.45e-07 5.67e-08 1.55e-07 9.19e-08 1.52e-07 6.76e-08 5.91e-08 7.49e-08 4.09e-08 1.33e-07 6.07e-08 4.23e-08 1.22e-07 1.24e-07 1.44e-07 2.93e-08 1.5e-07 1.21e-07 1.1e-07 9.61e-08 1.2e-07 1.05e-07 9.92e-08 3.08e-08 3.73e-08 8.25e-08 7.02e-08 3.2e-08 5.37e-08 8.72e-08 6.37e-08 3.76e-08 5.34e-08 1.36e-07 5.21e-08 1.44e-08 3.42e-08 1.86e-08 1.2e-07 1.89e-09 5e-08
ENSG00000117016 RIMS3 -15018 3.75e-05 3.1e-05 6.99e-06 1.62e-05 7.11e-06 1.8e-05 4.47e-05 6.22e-06 3.27e-05 1.8e-05 4.45e-05 1.95e-05 5.36e-05 1.46e-05 8.05e-06 2.32e-05 1.96e-05 3.03e-05 9.7e-06 8.59e-06 2.06e-05 3.59e-05 3.42e-05 1.06e-05 4.97e-05 1.12e-05 1.69e-05 1.56e-05 3.53e-05 3.04e-05 2.2e-05 2.22e-06 4.39e-06 8.55e-06 1.33e-05 7.42e-06 4.42e-06 4.02e-06 6.59e-06 3.95e-06 2.01e-06 3.84e-05 4.04e-06 5.58e-07 3.34e-06 5.22e-06 5.05e-06 2.65e-06 1.74e-06
ENSG00000164002 EXO5 141923 4.19e-06 4.55e-06 8.72e-07 2.43e-06 1.6e-06 1.53e-06 3.33e-06 9.78e-07 4.13e-06 2.17e-06 4.71e-06 3.37e-06 7.27e-06 2.16e-06 1.46e-06 3.05e-06 2.06e-06 3.09e-06 1.45e-06 9.49e-07 2.88e-06 4.35e-06 3.64e-06 1.6e-06 5.44e-06 1.67e-06 2.56e-06 1.72e-06 4.36e-06 4e-06 1.94e-06 4.91e-07 6.1e-07 1.87e-06 2.01e-06 9.43e-07 9.81e-07 4.24e-07 1.06e-06 3.23e-07 7.64e-07 4.93e-06 3.64e-07 1.62e-07 6.1e-07 6.74e-07 9.74e-07 5.52e-07 3.58e-07
ENSG00000179862 \N -211702 1.87e-06 2.43e-06 3.29e-07 1.64e-06 4.89e-07 8.4e-07 1.33e-06 6.43e-07 1.7e-06 8.28e-07 2.11e-06 1.31e-06 3.35e-06 1.02e-06 5.46e-07 1.49e-06 9.79e-07 1.92e-06 7.93e-07 1.05e-06 1.12e-06 2.34e-06 1.95e-06 1.02e-06 3.36e-06 1.2e-06 1.22e-06 1.46e-06 1.92e-06 1.67e-06 1.08e-06 2.37e-07 5.52e-07 1.09e-06 9.17e-07 7.45e-07 7.76e-07 4.74e-07 9.3e-07 2.76e-07 2.25e-07 2.83e-06 5.1e-07 1.87e-07 2.87e-07 3.09e-07 8.08e-07 2.21e-07 2.01e-07
ENSG00000259943 AL050341.2 392697 1.24e-06 8.36e-07 2.81e-07 3.68e-07 1.96e-07 3.2e-07 7.22e-07 2.98e-07 8.36e-07 2.69e-07 1.13e-06 5.55e-07 1.28e-06 2.14e-07 3.9e-07 4.84e-07 7.39e-07 5.31e-07 3.98e-07 3.31e-07 2.93e-07 6.2e-07 5.63e-07 3.62e-07 1.54e-06 2.44e-07 5.49e-07 4.4e-07 7.07e-07 9.21e-07 4.59e-07 4.47e-08 1.48e-07 2.35e-07 3.29e-07 2.76e-07 2.98e-07 1.51e-07 1.13e-07 8.8e-09 2.18e-07 8.45e-07 6.53e-08 5.71e-08 1.72e-07 4.53e-08 1.9e-07 8.51e-08 6.51e-08
ENSG00000260920 AL031985.3 186345 2.65e-06 2.56e-06 4.85e-07 2.03e-06 8.02e-07 8.89e-07 2.08e-06 8.73e-07 1.98e-06 1.18e-06 2.52e-06 1.49e-06 3.55e-06 1.35e-06 8.88e-07 1.86e-06 1.58e-06 2.19e-06 1.49e-06 1.37e-06 1.39e-06 3.09e-06 2.59e-06 1.17e-06 4.15e-06 1.02e-06 1.44e-06 1.79e-06 2.71e-06 2.24e-06 1.89e-06 3.97e-07 6.01e-07 1.28e-06 1.45e-06 9.87e-07 8.92e-07 4.49e-07 1.22e-06 3.98e-07 3.62e-07 3.28e-06 6.49e-07 1.81e-07 3.63e-07 4.01e-07 8.74e-07 2.07e-07 1.59e-07
ENSG00000272145 NFYC-AS1 -41402 1.39e-05 1.36e-05 2.65e-06 8.75e-06 3.02e-06 7.23e-06 1.85e-05 3.1e-06 1.35e-05 7.27e-06 1.87e-05 7.38e-06 2.46e-05 5.14e-06 4.43e-06 9.17e-06 8.03e-06 1.31e-05 4.15e-06 4.08e-06 8.07e-06 1.34e-05 1.4e-05 4.73e-06 2.52e-05 5.26e-06 7.59e-06 6.67e-06 1.61e-05 1.36e-05 8.79e-06 1.2e-06 1.55e-06 4.4e-06 6.48e-06 3.8e-06 2.24e-06 2.71e-06 3.09e-06 2.01e-06 1.72e-06 1.73e-05 2.34e-06 4.43e-07 1.97e-06 2.64e-06 2.9e-06 1.34e-06 1.01e-06