Genes within 1Mb (chr1:40616080:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084072 PPIE 923898 pQTL 2.41e-02 0.141 0.0624 0.00152 0.0 0.0661
ENSG00000117000 RLF 454693 eQTL 2.89e-02 0.0493 0.0225 0.0 0.0 0.0658
ENSG00000117013 KCNQ4 -167707 eQTL 2.60e-03 0.207 0.0686 0.0 0.0 0.0658
ENSG00000117016 RIMS3 -49602 eQTL 1.04e-03 0.192 0.0583 0.00201 0.0 0.0658
ENSG00000164002 EXO5 107339 eQTL 3.55e-04 -0.149 0.0416 0.0 0.0 0.0658
ENSG00000179862 CITED4 -246286 eQTL 2.90e-03 0.158 0.0528 0.0 0.0 0.0658
ENSG00000187815 ZFP69 138790 eQTL 5.34e-03 0.114 0.0408 0.0 0.0 0.0658
ENSG00000238287 AL603839.3 107419 eQTL 1.57e-14 0.626 0.0803 0.0 0.0 0.0658
ENSG00000259943 AL050341.2 358113 eQTL 2.79e-04 -0.14 0.0383 0.00303 0.0 0.0658
ENSG00000261798 AL033527.3 827104 eQTL 3.66e-02 -0.14 0.0668 0.0 0.0 0.0658
ENSG00000272145 NFYC-AS1 -75986 eQTL 1.81e-03 -0.209 0.0669 0.0015 0.0 0.0658


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117016 RIMS3 -49602 1.3e-05 1.26e-05 2.44e-06 8.31e-06 2.4e-06 6.03e-06 1.57e-05 2.2e-06 1.24e-05 6.01e-06 1.52e-05 6.62e-06 2.13e-05 4.55e-06 3.96e-06 7.69e-06 6.86e-06 1.11e-05 3.64e-06 3.24e-06 6.47e-06 1.15e-05 1.2e-05 4.2e-06 2.14e-05 4.72e-06 6.74e-06 5.4e-06 1.37e-05 1.19e-05 7.73e-06 1.06e-06 1.23e-06 3.93e-06 5.86e-06 2.85e-06 1.7e-06 2.02e-06 2.49e-06 1.54e-06 1.3e-06 1.71e-05 1.63e-06 2.66e-07 1.02e-06 1.94e-06 1.94e-06 6.16e-07 4.53e-07
ENSG00000179862 CITED4 -246286 1.97e-06 1.95e-06 2.72e-07 1.74e-06 4.75e-07 8.22e-07 1.21e-06 4.45e-07 1.78e-06 7.41e-07 1.84e-06 1.32e-06 2.9e-06 5.83e-07 4.07e-07 1e-06 1.06e-06 1.29e-06 5.95e-07 7.37e-07 6.34e-07 1.93e-06 1.47e-06 1.01e-06 2.67e-06 9.19e-07 1.05e-06 1.05e-06 1.67e-06 1.61e-06 7.39e-07 2.7e-07 3.55e-07 1.02e-06 8.27e-07 6.03e-07 7.42e-07 3.45e-07 6.4e-07 2.05e-07 3.16e-07 2.66e-06 4.24e-07 1.99e-07 3.52e-07 3.02e-07 2.71e-07 1.43e-07 2.41e-07
ENSG00000259943 AL050341.2 358113 1.24e-06 9.48e-07 2.95e-07 9.87e-07 2.53e-07 4.9e-07 1.08e-06 3.28e-07 1.13e-06 3.87e-07 1.35e-06 5.76e-07 1.82e-06 2.57e-07 4.3e-07 6.57e-07 7.96e-07 5.54e-07 6.68e-07 6.61e-07 3.6e-07 9.14e-07 7.08e-07 5.6e-07 1.94e-06 2.99e-07 6.16e-07 5.65e-07 8.56e-07 1.13e-06 5.79e-07 6.15e-08 1.76e-07 6.35e-07 4.15e-07 4.34e-07 5.19e-07 1.23e-07 2.19e-07 1.54e-07 3.03e-07 1.48e-06 6.94e-08 4.22e-08 1.74e-07 7.22e-08 1.77e-07 8.41e-08 5.84e-08
ENSG00000260920 \N 151761 4.51e-06 4.68e-06 8.24e-07 3.14e-06 1.32e-06 1.57e-06 3.23e-06 1.01e-06 4.26e-06 2.01e-06 4.14e-06 3.21e-06 7.77e-06 2.19e-06 1.3e-06 2.66e-06 2.06e-06 2.88e-06 1.48e-06 9.85e-07 2.28e-06 3.89e-06 3.39e-06 1.52e-06 5.2e-06 1.32e-06 2.35e-06 1.57e-06 4.17e-06 4.14e-06 2.17e-06 4.91e-07 7.93e-07 1.44e-06 2.06e-06 9.79e-07 9.81e-07 4.94e-07 9.49e-07 3.71e-07 4.63e-07 5.47e-06 4.01e-07 1.63e-07 4.38e-07 3.57e-07 6.63e-07 2.11e-07 1.94e-07
ENSG00000272145 NFYC-AS1 -75986 8.82e-06 9.5e-06 1.23e-06 5.82e-06 2.39e-06 4.19e-06 1.01e-05 1.81e-06 8.5e-06 4.74e-06 1.06e-05 4.92e-06 1.34e-05 3.85e-06 2.24e-06 6.29e-06 4.09e-06 6.88e-06 2.6e-06 2.88e-06 4.7e-06 7.98e-06 7.17e-06 3.29e-06 1.32e-05 3.22e-06 4.47e-06 3.38e-06 8.26e-06 7.94e-06 4.92e-06 9.59e-07 1.27e-06 3.26e-06 4.02e-06 2.38e-06 1.84e-06 1.84e-06 2.15e-06 9.75e-07 9.58e-07 1.23e-05 1.32e-06 1.88e-07 7.53e-07 1.48e-06 1.24e-06 6.94e-07 5.88e-07