Genes within 1Mb (chr1:40586638:AG:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 269352 eQTL 3.31e-02 -0.0868 0.0407 0.0 0.0 0.0756
ENSG00000066136 NFYC -105051 eQTL 6.54e-05 0.0656 0.0164 0.0 0.0 0.0756
ENSG00000117010 ZNF684 55065 eQTL 2.66e-02 0.0686 0.0309 0.0 0.0 0.0756
ENSG00000131238 PPT1 488911 eQTL 7.97e-03 -0.14 0.0526 0.0 0.0 0.0756
ENSG00000164002 EXO5 77897 eQTL 2.06e-03 -0.12 0.0387 0.0 0.0 0.0756
ENSG00000187801 ZFP69B 136531 eQTL 3.64e-05 -0.202 0.0487 0.0 0.0 0.0756
ENSG00000187815 ZFP69 109348 eQTL 1.09e-03 -0.124 0.0379 0.0 0.0 0.0756
ENSG00000213172 AL031985.1 221872 eQTL 2.55e-02 -0.111 0.0498 0.0 0.0 0.0756
ENSG00000228477 AL663070.1 623958 eQTL 2.01e-02 -0.108 0.0465 0.0017 0.0 0.0756
ENSG00000260920 AL031985.3 122319 eQTL 7.55e-04 -0.15 0.0443 0.0 0.0 0.0756


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000049089 COL9A2 269352 1.41e-06 3.11e-07 1.11e-07 4.32e-07 9.94e-08 4.06e-07 6.02e-07 5.35e-08 1.89e-07 9.35e-08 1.69e-07 8.55e-08 1.02e-06 7.95e-08 7.98e-08 1.1e-07 4.18e-08 3.56e-07 7.39e-08 5.61e-08 1.34e-07 1.9e-07 3.3e-07 2.83e-08 3.98e-07 1.22e-07 1.31e-07 1.04e-07 2.11e-07 3.71e-07 1.59e-07 3.82e-08 3.3e-08 1.54e-07 1.22e-07 3.05e-08 3.91e-08 8.76e-08 6.62e-08 8.09e-08 4.45e-08 1.55e-06 7.6e-08 1.86e-08 8.16e-08 1.83e-08 1.19e-07 4.7e-09 4.85e-08
ENSG00000066136 NFYC -105051 1.46e-05 3.13e-06 6.36e-07 2.02e-06 4.78e-07 1.59e-06 3.48e-06 2.21e-07 1.72e-06 7.54e-07 1.86e-06 8.75e-07 6.66e-06 4.13e-07 1.23e-06 1.62e-06 1.01e-06 2.72e-06 5.54e-07 7.96e-07 7.75e-07 3.02e-06 4.13e-06 6.79e-07 2.59e-06 1.11e-06 1.11e-06 1.46e-06 2.45e-06 1.97e-06 8.88e-07 6.84e-08 3.97e-07 1.58e-06 9e-07 5.4e-07 8.44e-07 4.21e-07 1.34e-06 4.28e-07 3.06e-07 8.26e-06 1.8e-06 2.67e-08 1.84e-07 3.25e-07 2.18e-07 3.04e-09 9.42e-08
ENSG00000117010 ZNF684 55065 5.51e-05 6.7e-06 2.48e-06 3.51e-06 1.66e-06 5.07e-06 1.04e-05 4.04e-07 5.08e-06 2.47e-06 5.26e-06 3.21e-06 1.11e-05 2.04e-06 2.59e-06 4.34e-06 1.92e-06 6.67e-06 1.34e-06 1.04e-06 2.9e-06 6.12e-06 1.05e-05 1.44e-06 6.54e-06 2.08e-06 2.39e-06 1.55e-06 5.97e-06 6.64e-06 2.7e-06 2.56e-07 5.42e-07 2.98e-06 2.15e-06 1.13e-06 1.19e-06 1.08e-06 1.09e-06 1.15e-06 7.52e-07 1.3e-05 4.22e-06 1.95e-07 3.68e-07 1.32e-06 7.91e-07 1.38e-07 1.98e-07
ENSG00000131238 PPT1 488911 4.89e-07 1.11e-07 3.54e-08 1.81e-07 9.91e-08 9.91e-08 1.61e-07 5.29e-08 1.37e-07 4.24e-08 1.63e-07 7.6e-08 1.53e-07 6.07e-08 4.84e-08 7.89e-08 5.1e-08 1.14e-07 5.22e-08 3.74e-08 1.04e-07 1.33e-07 1.34e-07 4.99e-08 1.31e-07 1.09e-07 1.1e-07 8.45e-08 1.03e-07 1.12e-07 9.58e-08 3.19e-08 2.75e-08 8.68e-08 9.15e-08 4.12e-08 5.64e-08 8.78e-08 8.22e-08 3.07e-08 3.07e-08 1.59e-07 5.24e-08 0.0 1.12e-07 1.83e-08 1.37e-07 4.96e-09 4.72e-08
ENSG00000213172 AL031985.1 221872 2.64e-06 6.99e-07 3.03e-07 4.72e-07 1.08e-07 6.06e-07 1.09e-06 5.2e-08 3.32e-07 1.7e-07 3.92e-07 1.22e-07 1.82e-06 8.26e-08 3.1e-07 2.18e-07 9.53e-08 5.12e-07 1.5e-07 1.15e-07 1.92e-07 3.65e-07 6.11e-07 4.91e-08 8.33e-07 1.86e-07 2.22e-07 1.69e-07 4.63e-07 8.4e-07 2.93e-07 3.68e-08 3.13e-08 4.16e-07 3.3e-07 4.6e-08 9.11e-08 5.53e-08 4.17e-08 2.22e-08 4.36e-08 2.43e-06 2.9e-07 1.2e-08 5.87e-08 6.39e-09 8.46e-08 4.5e-09 5.09e-08
ENSG00000260920 AL031985.3 122319 1.04e-05 2.6e-06 8.92e-07 2.01e-06 4.27e-07 1.66e-06 2.54e-06 1.4e-07 1.73e-06 6.2e-07 1.95e-06 6.08e-07 4.79e-06 2.89e-07 1.26e-06 1.1e-06 1.04e-06 2.15e-06 6.6e-07 4.65e-07 6.67e-07 1.95e-06 3.17e-06 5.66e-07 2.44e-06 7.64e-07 1.02e-06 9.81e-07 1.69e-06 1.66e-06 8.43e-07 8.48e-08 2.61e-07 1.67e-06 6.86e-07 4.42e-07 6.46e-07 3.71e-07 1.11e-06 3.46e-07 2.86e-07 7.04e-06 1.37e-06 5.8e-09 1.41e-07 1.47e-07 1.86e-07 2.23e-09 6.23e-08