Genes within 1Mb (chr1:40580599:G:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 697088 eQTL 1.32e-01 -0.0628 0.0416 0.00102 0.0 0.054
ENSG00000084072 PPIE 888417 pQTL 1.93e-02 0.16 0.0684 0.00166 0.0 0.0553
ENSG00000116983 HPCAL4 889114 eQTL 1.64e-02 -0.0764 0.0318 0.00108 0.0 0.054
ENSG00000117010 ZNF684 49026 eQTL 1.04e-02 -0.0941 0.0367 0.00164 0.0 0.054
ENSG00000117013 KCNQ4 -203188 eQTL 2.65e-02 0.168 0.0758 0.0 0.0 0.054
ENSG00000117016 RIMS3 -85083 eQTL 2.30e-03 0.197 0.0644 0.00111 0.0 0.054
ENSG00000164002 EXO5 71858 eQTL 4.21e-02 -0.0939 0.0461 0.0 0.0 0.054
ENSG00000179862 CITED4 -281767 eQTL 1.05e-03 0.191 0.0582 0.0 0.0 0.054
ENSG00000187801 ZFP69B 130492 eQTL 3.07e-02 -0.126 0.0582 0.00139 0.0 0.054
ENSG00000187815 ZFP69 103309 eQTL 1.67e-02 0.108 0.0451 0.0 0.0 0.054
ENSG00000238287 AL603839.3 71938 eQTL 2.01e-13 0.662 0.0888 0.0 0.0 0.054
ENSG00000259943 AL050341.2 322632 eQTL 6.11e-04 -0.146 0.0423 0.0 0.0 0.054


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116983 HPCAL4 889114 2.69e-07 1.19e-07 3.54e-08 1.81e-07 8.92e-08 9.91e-08 1.44e-07 5.33e-08 1.4e-07 4.4e-08 1.56e-07 8.14e-08 1.41e-07 6.38e-08 5.53e-08 7.26e-08 3.88e-08 1.18e-07 5.36e-08 4.42e-08 1.04e-07 1.23e-07 1.32e-07 4.13e-08 1.37e-07 1.14e-07 1.06e-07 9.36e-08 1.05e-07 1.12e-07 9.58e-08 4.1e-08 3.3e-08 8.65e-08 4.92e-08 3.96e-08 5.01e-08 9.23e-08 7.23e-08 3.18e-08 5.43e-08 1.33e-07 4.14e-08 1.24e-08 6.92e-08 1.83e-08 1.19e-07 3.95e-09 4.79e-08
ENSG00000117016 RIMS3 -85083 9.28e-06 9.64e-06 7.05e-07 5.06e-06 1.84e-06 4.24e-06 1.02e-05 1.36e-06 6.66e-06 4.43e-06 1.06e-05 4.77e-06 1.23e-05 3.9e-06 1.57e-06 5.79e-06 3.86e-06 4.84e-06 1.92e-06 2.27e-06 3.97e-06 7.77e-06 6.87e-06 1.91e-06 1.3e-05 2.37e-06 4.39e-06 3.2e-06 7.98e-06 7.35e-06 4.13e-06 7.36e-07 7.22e-07 2.54e-06 3.56e-06 1.31e-06 1.1e-06 5.44e-07 9.34e-07 8.61e-07 7.37e-07 1.24e-05 1.4e-06 1.65e-07 7.54e-07 1.01e-06 1.06e-06 6.72e-07 5.73e-07
ENSG00000179862 CITED4 -281767 1.28e-06 9.53e-07 3.06e-07 1.25e-06 2.28e-07 6.28e-07 1.63e-06 3.02e-07 1.2e-06 3.82e-07 1.38e-06 6.08e-07 2.15e-06 2.88e-07 4.36e-07 7.41e-07 7.74e-07 5.82e-07 5.54e-07 6.76e-07 3.91e-07 1.24e-06 9.22e-07 5.25e-07 2.26e-06 3.59e-07 7.6e-07 7.59e-07 1.29e-06 1.11e-06 5.47e-07 1.56e-07 2.31e-07 5.24e-07 5.17e-07 3.71e-07 4.92e-07 1.55e-07 2.17e-07 9.18e-08 2.87e-07 1.6e-06 8.26e-08 8.04e-08 1.72e-07 1.25e-07 2.21e-07 8.18e-08 9.13e-08
ENSG00000259943 AL050341.2 322632 1.29e-06 9.03e-07 1.54e-07 7.39e-07 9.23e-08 5.63e-07 1.09e-06 2e-07 8.29e-07 2.98e-07 1.11e-06 5.75e-07 1.59e-06 2.5e-07 3.96e-07 4.47e-07 6.98e-07 5.26e-07 3.64e-07 4.38e-07 2.29e-07 7.21e-07 6.1e-07 2.95e-07 1.86e-06 2.44e-07 5.83e-07 4.98e-07 8.56e-07 8.89e-07 4.39e-07 4.57e-08 1.08e-07 2.35e-07 5.8e-07 2.04e-07 2.59e-07 1.5e-07 1.1e-07 1.84e-08 2.99e-07 1.5e-06 6.58e-08 4.15e-08 1.94e-07 7.77e-08 1.9e-07 8.57e-08 5.26e-08
ENSG00000260920 \N 116280 5.92e-06 6.14e-06 9.13e-07 3.67e-06 1.62e-06 2.47e-06 8.04e-06 9.79e-07 5.05e-06 2.91e-06 6.86e-06 3.33e-06 9.42e-06 2.13e-06 1.31e-06 3.9e-06 1.93e-06 3.96e-06 1.43e-06 1.15e-06 2.79e-06 5.53e-06 4.72e-06 1.39e-06 8.97e-06 1.95e-06 2.22e-06 1.82e-06 5.11e-06 4.25e-06 2.83e-06 4.34e-07 7.32e-07 1.48e-06 1.96e-06 9.43e-07 9.99e-07 4.08e-07 1.06e-06 4.55e-07 4.59e-07 8.33e-06 6.7e-07 1.62e-07 4.38e-07 1.14e-06 1.15e-06 4.25e-07 3.41e-07
ENSG00000272145 \N -111467 6.3e-06 6.75e-06 8.15e-07 3.87e-06 1.52e-06 2.71e-06 8.67e-06 1.07e-06 4.8e-06 2.81e-06 7.5e-06 2.83e-06 9.9e-06 2.32e-06 1.11e-06 3.99e-06 2.6e-06 3.87e-06 1.55e-06 1.37e-06 2.6e-06 5.5e-06 4.79e-06 1.42e-06 9.14e-06 1.96e-06 2.55e-06 1.73e-06 5.95e-06 4.38e-06 2.68e-06 4.15e-07 6.11e-07 1.59e-06 2.04e-06 9.03e-07 9.73e-07 4.24e-07 9.12e-07 5e-07 4.94e-07 8.42e-06 8.16e-07 1.6e-07 5.01e-07 1.28e-06 1.03e-06 4.27e-07 3.89e-07