Genes within 1Mb (chr1:40568319:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 684808 eQTL 7.76e-02 -0.0727 0.0411 0.00135 0.0 0.0554
ENSG00000084072 PPIE 876137 pQTL 2.34e-02 0.154 0.0679 0.00151 0.0 0.0564
ENSG00000116983 HPCAL4 876834 eQTL 1.28e-02 -0.0784 0.0314 0.00137 0.0 0.0554
ENSG00000117010 ZNF684 36746 eQTL 1.86e-02 -0.0855 0.0363 0.00108 0.0 0.0554
ENSG00000117013 KCNQ4 -215468 eQTL 2.76e-02 0.165 0.075 0.0 0.0 0.0554
ENSG00000117016 RIMS3 -97363 eQTL 1.93e-03 0.198 0.0637 0.00127 0.0 0.0554
ENSG00000164002 EXO5 59578 eQTL 4.10e-02 -0.0934 0.0456 0.0 0.0 0.0554
ENSG00000179862 CITED4 -294047 eQTL 1.44e-03 0.184 0.0576 0.0 0.0 0.0554
ENSG00000187801 ZFP69B 118212 eQTL 4.35e-02 -0.116 0.0576 0.0012 0.0 0.0554
ENSG00000187815 ZFP69 91029 eQTL 2.49e-02 0.1 0.0446 0.0 0.0 0.0554
ENSG00000238287 AL603839.3 59658 eQTL 1.45e-14 0.684 0.0876 0.0 0.0 0.0554
ENSG00000259943 AL050341.2 310352 eQTL 1.80e-03 -0.131 0.0419 0.0 0.0 0.0554


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116983 HPCAL4 876834 4.68e-07 3.55e-07 1.63e-07 3.48e-07 9.82e-08 1.57e-07 3.57e-07 8.37e-08 2.6e-07 1.65e-07 2.84e-07 1.96e-07 3.77e-07 1.1e-07 1.68e-07 1.53e-07 1.18e-07 3.02e-07 2.12e-07 8.41e-08 1.61e-07 2.45e-07 2.04e-07 6.65e-08 4.88e-07 2.46e-07 2.24e-07 1.7e-07 1.87e-07 4.9e-07 1.95e-07 7.91e-08 3.8e-08 1.21e-07 1.76e-07 7.68e-08 1.02e-07 7.98e-08 5.98e-08 7.39e-08 5.71e-08 2.71e-07 5.51e-08 1.11e-08 8.68e-08 8.76e-09 8.94e-08 2.8e-09 5.54e-08
ENSG00000117016 RIMS3 -97363 1.39e-05 1.67e-05 2.96e-06 9.77e-06 2.45e-06 6.28e-06 1.99e-05 2.53e-06 1.54e-05 7.53e-06 1.85e-05 7.07e-06 2.39e-05 5.81e-06 4.78e-06 9.16e-06 8.2e-06 1.23e-05 4.22e-06 4.08e-06 7.56e-06 1.45e-05 1.37e-05 4.71e-06 2.59e-05 5.29e-06 7.54e-06 6.24e-06 1.57e-05 1.42e-05 1.04e-05 1.05e-06 1.36e-06 4.01e-06 6.9e-06 3.63e-06 1.68e-06 2.4e-06 2.8e-06 1.88e-06 1.12e-06 1.92e-05 2.48e-06 2.71e-07 1.03e-06 2.34e-06 2.15e-06 7.99e-07 6.24e-07
ENSG00000179862 CITED4 -294047 4e-06 4.65e-06 6.41e-07 2.39e-06 1.12e-06 1.03e-06 2.37e-06 9.76e-07 3.14e-06 1.9e-06 3.39e-06 1.95e-06 4.69e-06 1.96e-06 1.39e-06 2.37e-06 2.04e-06 2.54e-06 1.43e-06 9.74e-07 2.2e-06 3.91e-06 3.4e-06 1.8e-06 4.9e-06 1.33e-06 2.15e-06 1.47e-06 3.88e-06 3.86e-06 1.95e-06 5.43e-07 5.96e-07 1.59e-06 1.98e-06 9.97e-07 9.24e-07 4.75e-07 1.27e-06 3.81e-07 2.74e-07 4.34e-06 4.37e-07 1.85e-07 3.47e-07 3.62e-07 8.55e-07 2.32e-07 2.56e-07
ENSG00000259943 AL050341.2 310352 3.61e-06 4.33e-06 7.29e-07 2e-06 8.47e-07 8.1e-07 2.48e-06 8.83e-07 2.61e-06 1.57e-06 3.01e-06 1.66e-06 3.69e-06 1.37e-06 1.3e-06 2e-06 1.87e-06 2.03e-06 1.36e-06 1.1e-06 1.92e-06 3.49e-06 2.77e-06 1.4e-06 4.68e-06 1.24e-06 1.84e-06 1.72e-06 3.12e-06 3.38e-06 1.98e-06 4.71e-07 5.04e-07 1.36e-06 1.84e-06 8.52e-07 1e-06 4.37e-07 1.26e-06 3.46e-07 3.59e-07 3.95e-06 4.02e-07 1.69e-07 3.52e-07 4e-07 8.09e-07 1.82e-07 1.77e-07
ENSG00000260920 \N 104000 1.31e-05 1.53e-05 2.97e-06 9.4e-06 2.48e-06 6.16e-06 1.87e-05 2.45e-06 1.44e-05 6.93e-06 1.75e-05 6.87e-06 2.24e-05 5.36e-06 4.5e-06 9.02e-06 8.14e-06 1.19e-05 4.02e-06 3.72e-06 7.08e-06 1.37e-05 1.31e-05 4.28e-06 2.46e-05 5.1e-06 7.67e-06 5.64e-06 1.48e-05 1.31e-05 9.4e-06 9.73e-07 1.25e-06 3.85e-06 6.5e-06 3.29e-06 1.77e-06 2.26e-06 2.61e-06 1.65e-06 1.05e-06 1.85e-05 2.39e-06 2.52e-07 9.99e-07 2.27e-06 2.1e-06 6.83e-07 5.93e-07
ENSG00000272145 \N -123747 1.11e-05 1.31e-05 2.46e-06 7.89e-06 2.44e-06 5.26e-06 1.38e-05 2.15e-06 1.15e-05 6.13e-06 1.43e-05 6.14e-06 1.8e-05 4.45e-06 3.96e-06 7.31e-06 6.79e-06 9.69e-06 3.49e-06 3.12e-06 6.71e-06 1.18e-05 1.03e-05 3.54e-06 2.07e-05 4.72e-06 6.69e-06 5.03e-06 1.3e-05 1.1e-05 7.58e-06 9.88e-07 1.17e-06 3.57e-06 5.59e-06 2.84e-06 1.82e-06 1.99e-06 1.96e-06 1.19e-06 9.75e-07 1.58e-05 1.87e-06 2.1e-07 7.57e-07 1.67e-06 1.74e-06 7.99e-07 4.52e-07