Genes within 1Mb (chr1:40259654:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000049089 COL9A2 -57632 pQTL 3.10e-02 0.102 0.0473 0.0 0.0 0.112
ENSG00000084072 PPIE 567472 eQTL 8.66e-03 0.0973 0.037 0.0 0.0 0.113
ENSG00000131238 PPT1 161927 eQTL 2.95e-18 0.377 0.0423 0.0 0.0 0.113
ENSG00000238287 AL603839.3 -249007 eQTL 4.44e-04 0.225 0.0638 0.0 0.0 0.113
ENSG00000259943 AL050341.2 1687 eQTL 9.62e-07 -0.146 0.0296 0.0 0.0374 0.113
ENSG00000261798 AL033527.3 470678 eQTL 3.60e-02 -0.109 0.0519 0.0 0.0 0.113
ENSG00000272145 NFYC-AS1 -432412 eQTL 4.82e-02 0.103 0.0521 0.00106 0.0 0.113


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084072 PPIE 567472 2.8e-07 2.3e-07 6.72e-08 2.41e-07 9.82e-08 7.75e-08 2.4e-07 6.72e-08 1.94e-07 9.35e-08 2.18e-07 1.62e-07 1.95e-07 8.07e-08 6.53e-08 7.98e-08 6.81e-08 1.77e-07 7.27e-08 5.33e-08 1.33e-07 1.56e-07 1.68e-07 3.51e-08 2.17e-07 1.56e-07 1.31e-07 1.26e-07 1.32e-07 1.38e-07 1.27e-07 4.85e-08 4.76e-08 8.89e-08 3.97e-08 5.04e-08 6.2e-08 5.53e-08 6.21e-08 6.55e-08 5.39e-08 1.59e-07 4.18e-08 6.51e-08 4e-08 1.8e-08 7.92e-08 2.75e-09 4.68e-08
ENSG00000116981 \N 587616 2.67e-07 1.83e-07 6.45e-08 2.35e-07 1.03e-07 8.89e-08 2.16e-07 6.2e-08 1.85e-07 8.53e-08 1.86e-07 1.52e-07 1.79e-07 8e-08 6.27e-08 7.97e-08 5.73e-08 1.64e-07 7.36e-08 4.95e-08 1.33e-07 1.42e-07 1.58e-07 3.49e-08 2.02e-07 1.43e-07 1.22e-07 1.12e-07 1.34e-07 1.24e-07 1.26e-07 4.47e-08 4.34e-08 8.56e-08 3.12e-08 4.6e-08 5.67e-08 5.71e-08 6.5e-08 5.96e-08 5.44e-08 1.59e-07 2.84e-08 5.68e-08 3.34e-08 1.89e-08 8.46e-08 0.0 4.72e-08
ENSG00000117000 \N 98267 1.08e-05 1.58e-05 2.05e-06 7.65e-06 2.35e-06 5.36e-06 1.37e-05 2.25e-06 1.37e-05 5.8e-06 1.76e-05 6.83e-06 2.09e-05 4.33e-06 3.4e-06 6.61e-06 6.4e-06 9.74e-06 3.14e-06 3.04e-06 6.27e-06 1.12e-05 1.03e-05 3.29e-06 2.05e-05 4.42e-06 6.59e-06 5.03e-06 1.24e-05 9.7e-06 9.85e-06 9.82e-07 1.13e-06 2.93e-06 5.55e-06 2.81e-06 1.87e-06 1.95e-06 2.18e-06 1.07e-06 9.75e-07 1.67e-05 1.63e-06 2.73e-07 7.57e-07 1.78e-06 1.8e-06 6.7e-07 4.52e-07
ENSG00000131238 PPT1 161927 4.82e-06 9.5e-06 7.59e-07 3.6e-06 1.65e-06 1.51e-06 7.26e-06 1.17e-06 5.33e-06 2.84e-06 8.76e-06 3.68e-06 9.33e-06 2.13e-06 9.98e-07 3.78e-06 3e-06 3.87e-06 1.58e-06 1.41e-06 2.61e-06 5.54e-06 4.77e-06 1.53e-06 8.88e-06 2.08e-06 2.68e-06 1.78e-06 4.79e-06 4.97e-06 3.84e-06 4.96e-07 7.03e-07 1.85e-06 1.96e-06 1.07e-06 1.1e-06 5.42e-07 8.69e-07 6.18e-07 5.82e-07 8.15e-06 1.02e-06 1.88e-07 7.89e-07 9.16e-07 1.16e-06 7.35e-07 4.39e-07
ENSG00000259943 AL050341.2 1687 0.000119 0.000116 3.17e-05 5.49e-05 3.15e-05 5.02e-05 0.000143 3.15e-05 0.000127 8.96e-05 0.000171 7.24e-05 0.00017 5.85e-05 3.19e-05 0.000106 6.69e-05 0.000105 3.68e-05 3.68e-05 8.11e-05 0.000147 0.000113 4.6e-05 0.000165 5.07e-05 8.01e-05 6.11e-05 0.000113 8.99e-05 8.52e-05 1.14e-05 1.87e-05 3.2e-05 4.17e-05 2.66e-05 1.93e-05 1.98e-05 2.5e-05 1.44e-05 1.29e-05 0.000112 1.62e-05 3.06e-06 1.52e-05 2.21e-05 2.02e-05 1.39e-05 9.23e-06
ENSG00000272145 NFYC-AS1 -432412 5.59e-07 7.46e-07 1.31e-07 4.43e-07 9.82e-08 2.16e-07 5.54e-07 1.73e-07 6.03e-07 2.26e-07 9e-07 4.62e-07 6e-07 1.23e-07 2.57e-07 1.92e-07 5.27e-07 3.79e-07 2.6e-07 1.24e-07 2.57e-07 3.65e-07 3.19e-07 1.32e-07 6.87e-07 2.6e-07 2.94e-07 2.71e-07 3.27e-07 5.82e-07 3.38e-07 6.92e-08 4.77e-08 1.23e-07 3.07e-07 1.82e-07 1.42e-07 1.18e-07 4.55e-08 2.68e-08 2.95e-08 4.95e-07 6.13e-08 2.07e-07 1.48e-07 9.49e-09 1.1e-07 4.47e-08 5.86e-08