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Genes within 1Mb (chr1:40259274:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -982880 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 375763 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -58539 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -432374 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -85576 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 567092 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 1038 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 682484 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 567789 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 97887 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -272299 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 219041 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 161547 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -249467 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -720414 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -603089 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -190828 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -218016 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 1307 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -432792 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -982880 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 375763 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -432374 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -85576 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 567092 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 1038 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 682484 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 470409 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 97887 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -272299 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 219041 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 161547 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -249467 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -720414 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -603089 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -218016 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 1307 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -432792 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -982880 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 375763 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -58539 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -432374 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -85576 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 567092 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 1038 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 682484 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 470409 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 97887 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -272299 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 219041 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 161547 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -249467 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -720414 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -603089 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -218016 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 487926 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 1307 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -432792 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -982880 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 375763 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -432374 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -85576 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 567092 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 1038 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 682484 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 470409 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 97887 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -272299 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 219041 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 161547 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -249467 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 304162 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -720414 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -603089 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -190828 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -218016 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 487926 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 1307 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -432792 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -432415 eQTL 0.0479 -0.0412 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 567789 eQTL 0.023 -0.077 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 97887 eQTL 1.04e-14 0.202 0.0257 0.0077 0.00761 0.0491
ENSG00000117013 KCNQ4 -524513 eQTL 1.24e-02 -0.202 0.0806 0.0 0.0 0.0491
ENSG00000131238 PPT1 161547 eQTL 1.44e-27 0.703 0.0626 0.0 0.0 0.0491
ENSG00000164002 EXO5 -249467 eQTL 6.83e-03 -0.133 0.049 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -190833 eQTL 0.0403 -0.127 0.062 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 1307 eQTL 1.02e-08 -0.258 0.0446 0.0 0.00943 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N 1038 0.00013 0.000131 1.91e-05 4.5e-05 2.3e-05 4.43e-05 0.000133 2.31e-05 0.000125 7.78e-05 0.000164 6.54e-05 0.000199 5.36e-05 2.47e-05 9.01e-05 5.58e-05 9.79e-05 3.08e-05 2.84e-05 6.51e-05 0.000143 0.000105 3.71e-05 0.000165 3.93e-05 7.37e-05 5.21e-05 0.000114 6.18e-05 6.99e-05 6.15e-06 8.66e-06 2.54e-05 2.72e-05 2e-05 9.36e-06 1.15e-05 1.85e-05 8.16e-06 4.38e-06 0.00014 1.44e-05 1.48e-06 1.2e-05 1.8e-05 1.65e-05 8.51e-06 6.41e-06
ENSG00000117000 RLF 97887 1.2e-05 1.18e-05 1.37e-06 6.41e-06 2.22e-06 4.22e-06 1.09e-05 1.58e-06 9.95e-06 5.14e-06 1.2e-05 4.92e-06 1.64e-05 3.63e-06 2.83e-06 6.93e-06 4.38e-06 7.74e-06 2.27e-06 2.91e-06 5.16e-06 1.09e-05 7.07e-06 2.9e-06 1.28e-05 3.24e-06 5.47e-06 4.75e-06 9.12e-06 7.69e-06 4.82e-06 9.85e-07 1.27e-06 3.07e-06 3.5e-06 2.36e-06 1.83e-06 1.42e-06 2.02e-06 2.1e-06 1.04e-06 1.51e-05 1.84e-06 1.64e-07 6.9e-07 1.73e-06 1.28e-06 7.99e-07 4.81e-07
ENSG00000117016 \N -406408 1.61e-06 8.5e-07 7.45e-08 3.81e-07 9.82e-08 4.63e-07 6.72e-07 1.01e-07 5.02e-07 2.06e-07 9.46e-07 2.11e-07 9.97e-07 1.56e-07 2.07e-07 2.18e-07 2.98e-07 4.07e-07 2.12e-07 1.87e-07 2.61e-07 9.14e-07 5.21e-07 1.25e-07 8.09e-07 2.32e-07 4e-07 2.19e-07 4.06e-07 7.71e-07 3.38e-07 8.48e-08 2.29e-07 2.22e-07 3.36e-07 6.94e-08 1.38e-07 6.67e-08 7.5e-08 3.03e-08 8.42e-08 7.45e-07 1.53e-07 1.52e-08 8.06e-08 9.85e-08 9.26e-08 0.0 4.82e-08
ENSG00000131238 PPT1 161547 7.8e-06 5.32e-06 7.8e-07 3.21e-06 1.12e-06 1.53e-06 5.15e-06 1.01e-06 5.08e-06 2.22e-06 5.26e-06 2.13e-06 7.66e-06 1.97e-06 1.43e-06 3.81e-06 1.96e-06 3.39e-06 1.45e-06 1e-06 3.06e-06 5.54e-06 3.78e-06 1.77e-06 5.16e-06 1.32e-06 2.45e-06 1.71e-06 4.23e-06 3.6e-06 2.53e-06 4.31e-07 5.21e-07 1.6e-06 1.94e-06 9.06e-07 1.07e-06 4.2e-07 8.13e-07 7.33e-07 2.22e-07 6.8e-06 1.32e-06 2.15e-07 3.64e-07 1.08e-06 6.65e-07 5.05e-07 4.38e-07
ENSG00000187801 ZFP69B -190833 6.55e-06 4.75e-06 3.38e-07 2.1e-06 6.15e-07 1.57e-06 2.79e-06 6.48e-07 2.68e-06 1.21e-06 3.27e-06 1.38e-06 6.07e-06 1.74e-06 9.1e-07 2.03e-06 1.77e-06 2.03e-06 1.09e-06 1.21e-06 1.96e-06 4.47e-06 3.36e-06 1.01e-06 4.08e-06 1.13e-06 1.79e-06 1.81e-06 3.2e-06 2.53e-06 1.92e-06 5.93e-07 7.92e-07 1.42e-06 1.29e-06 9.34e-07 9.21e-07 3.84e-07 1.28e-06 4.08e-07 3.05e-07 4.75e-06 8.15e-07 1.74e-07 3.38e-07 6.75e-07 6.43e-07 2.62e-07 2.56e-07
ENSG00000259943 AL050341.2 1307 0.000109 0.000108 1.42e-05 3.42e-05 1.81e-05 3.49e-05 0.000112 1.79e-05 9.85e-05 6.15e-05 0.000132 5.19e-05 0.000166 4.57e-05 2.04e-05 7.1e-05 4.69e-05 8.09e-05 2.51e-05 2.18e-05 4.95e-05 0.000117 8.23e-05 2.91e-05 0.000138 3.23e-05 5.8e-05 4.32e-05 9.71e-05 5.11e-05 5.73e-05 4.79e-06 7.03e-06 2.06e-05 2.28e-05 1.58e-05 7.41e-06 9.45e-06 1.36e-05 6.13e-06 3.31e-06 0.000112 1.13e-05 1.19e-06 9e-06 1.49e-05 1.38e-05 6.09e-06 4.17e-06
ENSG00000261798 \N 470298 1.28e-06 5.6e-07 6.26e-08 3.87e-07 1.07e-07 3.36e-07 5.28e-07 7.56e-08 2.76e-07 1.21e-07 4.64e-07 1.37e-07 6e-07 1.07e-07 9.33e-08 1.26e-07 8.64e-08 2.96e-07 9.97e-08 1.24e-07 1.8e-07 5.17e-07 3.7e-07 4.91e-08 4.27e-07 1.65e-07 2.22e-07 1.52e-07 2.19e-07 4.3e-07 1.93e-07 4.77e-08 6.78e-08 1.42e-07 1.69e-07 4.68e-08 1.06e-07 7.25e-08 4.17e-08 1.58e-08 2.87e-08 4.68e-07 7.72e-08 1.75e-08 3.48e-08 4.28e-08 8.98e-08 2e-09 4.94e-08