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Genes within 1Mb (chr1:40250367:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -991787 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 366856 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -67446 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -441281 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -94483 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 558185 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -7869 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 673577 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 558882 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 88980 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -281206 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 210134 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 152640 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -258374 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -729321 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -611996 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -199735 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -226923 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -7600 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -441699 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -991787 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 366856 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -441281 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -94483 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 558185 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -7869 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 673577 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 461502 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 88980 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -281206 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 210134 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 152640 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -258374 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -729321 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -611996 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -226923 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -7600 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -441699 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -991787 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 366856 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -67446 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -441281 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -94483 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 558185 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -7869 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 673577 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 461502 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 88980 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -281206 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 210134 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 152640 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -258374 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -729321 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -611996 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -226923 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 479019 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -7600 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -441699 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -991787 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 366856 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -441281 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -94483 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 558185 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -7869 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 673577 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 461502 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 88980 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -281206 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 210134 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 152640 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -258374 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 295255 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -729321 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -611996 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -199735 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -226923 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 479019 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -7600 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -441699 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -441322 eQTL 0.0468 -0.0413 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 558882 eQTL 0.0225 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 88980 eQTL 1.23e-14 0.201 0.0257 0.00642 0.00645 0.0491
ENSG00000117013 KCNQ4 -533420 eQTL 1.17e-02 -0.203 0.0805 0.0 0.0 0.0491
ENSG00000131238 PPT1 152640 eQTL 1.24e-27 0.703 0.0625 0.0 0.0 0.0491
ENSG00000164002 EXO5 -258374 eQTL 7.54e-03 -0.131 0.0489 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -199740 eQTL 0.0416 -0.126 0.0619 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -7600 eQTL 1.22e-08 -0.256 0.0445 0.0 0.00665 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -7869 3.81e-05 3.37e-05 6.45e-06 1.6e-05 6.29e-06 1.54e-05 4.75e-05 5.02e-06 3.43e-05 1.69e-05 4.22e-05 1.94e-05 5.08e-05 1.5e-05 7.47e-06 2.12e-05 1.92e-05 2.76e-05 8.23e-06 7.09e-06 1.71e-05 3.59e-05 3.42e-05 9.82e-06 4.87e-05 8.55e-06 1.57e-05 1.41e-05 3.42e-05 2.73e-05 2.25e-05 1.62e-06 2.95e-06 7.58e-06 1.27e-05 6.12e-06 3.46e-06 3.25e-06 5.18e-06 3.56e-06 1.71e-06 4e-05 3.87e-06 4.09e-07 2.71e-06 4.43e-06 4.38e-06 1.72e-06 1.53e-06
ENSG00000117000 RLF 88980 7.89e-06 9.41e-06 1.23e-06 5.17e-06 2.4e-06 3.91e-06 1.03e-05 1.85e-06 8.87e-06 5.05e-06 1.19e-05 5.59e-06 1.3e-05 3.77e-06 2.54e-06 6.36e-06 3.97e-06 6.71e-06 2.55e-06 2.63e-06 4.73e-06 8.85e-06 7.62e-06 3.15e-06 1.53e-05 2.46e-06 4.8e-06 3.55e-06 8.58e-06 7.81e-06 5.07e-06 9.42e-07 1.09e-06 2.89e-06 3.93e-06 2.11e-06 1.36e-06 1.57e-06 1.26e-06 9.87e-07 1.03e-06 1.3e-05 1.32e-06 1.79e-07 6.83e-07 1.63e-06 1.82e-06 7.1e-07 5.76e-07
ENSG00000117016 \N -415315 4.68e-07 2.5e-07 6.28e-08 2.87e-07 1.1e-07 1.57e-07 3.7e-07 7.56e-08 2.38e-07 1.46e-07 2.62e-07 2.04e-07 4.74e-07 8.55e-08 7.98e-08 1.53e-07 5.42e-08 2.56e-07 8.68e-08 6.58e-08 1.6e-07 2.45e-07 2.26e-07 3.83e-08 4.27e-07 1.71e-07 1.78e-07 1.54e-07 1.6e-07 2e-07 1.52e-07 4.58e-08 5.17e-08 1.27e-07 2.82e-07 3.94e-08 7.97e-08 7.75e-08 4.75e-08 8.34e-08 4.63e-08 3.73e-07 1.65e-08 1.55e-08 2.64e-08 1.22e-08 9.73e-08 0.0 4.55e-08
ENSG00000131238 PPT1 152640 4.04e-06 4.35e-06 6.25e-07 2.44e-06 9.65e-07 1.35e-06 3e-06 9.8e-07 3.65e-06 2.06e-06 4.16e-06 3.37e-06 6.49e-06 2.04e-06 1.38e-06 3.05e-06 1.82e-06 2.54e-06 1.32e-06 1.18e-06 2.35e-06 4.22e-06 3.38e-06 1.8e-06 5.93e-06 1.13e-06 2.47e-06 1.44e-06 3.87e-06 3.38e-06 1.95e-06 5.43e-07 8.14e-07 1.74e-06 2e-06 9.86e-07 9.07e-07 4.72e-07 1.33e-06 3.28e-07 4.41e-07 5.74e-06 3.82e-07 1.86e-07 3.52e-07 6.74e-07 1.03e-06 2.39e-07 1.77e-07
ENSG00000187801 ZFP69B -199740 1.97e-06 2.39e-06 2.52e-07 1.74e-06 4.83e-07 8.18e-07 1.29e-06 4.41e-07 1.65e-06 8.34e-07 1.97e-06 1.29e-06 3.27e-06 1.01e-06 5.01e-07 1.51e-06 1.12e-06 1.33e-06 5.93e-07 6.44e-07 9e-07 2.34e-06 1.86e-06 1.01e-06 3.4e-06 8.03e-07 1.19e-06 1.17e-06 1.68e-06 1.66e-06 9.07e-07 2.86e-07 4.55e-07 1.08e-06 1.02e-06 6.33e-07 7.55e-07 4.1e-07 5.19e-07 2.29e-07 1.52e-07 3.31e-06 5.13e-07 1.99e-07 3e-07 3.24e-07 8.36e-07 2.43e-07 2.62e-07
ENSG00000259943 AL050341.2 -7600 3.81e-05 3.37e-05 6.45e-06 1.6e-05 6.29e-06 1.54e-05 4.75e-05 5.07e-06 3.47e-05 1.69e-05 4.26e-05 1.94e-05 5.15e-05 1.52e-05 7.62e-06 2.12e-05 1.96e-05 2.76e-05 8.23e-06 7.2e-06 1.72e-05 3.59e-05 3.45e-05 9.82e-06 4.87e-05 8.74e-06 1.57e-05 1.41e-05 3.42e-05 2.77e-05 2.26e-05 1.61e-06 2.95e-06 7.58e-06 1.27e-05 6.19e-06 3.48e-06 3.25e-06 5.2e-06 3.57e-06 1.71e-06 4e-05 3.87e-06 4.08e-07 2.74e-06 4.43e-06 4.42e-06 1.72e-06 1.53e-06
ENSG00000261798 \N 461391 3.27e-07 1.59e-07 5.49e-08 2.43e-07 1.03e-07 1.25e-07 2.74e-07 5.78e-08 1.86e-07 1.11e-07 1.76e-07 1.48e-07 3.04e-07 8.15e-08 5.62e-08 1.06e-07 4.45e-08 1.8e-07 7.39e-08 5.46e-08 1.33e-07 1.9e-07 1.73e-07 3.42e-08 2.59e-07 1.31e-07 1.29e-07 1.26e-07 1.39e-07 1.33e-07 1.26e-07 3.78e-08 4.16e-08 9.9e-08 1.31e-07 2.85e-08 5.67e-08 5.25e-08 6.49e-08 6.07e-08 4.51e-08 2.41e-07 3.4e-08 1.79e-08 3.84e-08 9.31e-09 9.26e-08 2.1e-09 4.69e-08