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Genes within 1Mb (chr1:40241653:A:ATGAAAT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 358142 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -76160 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -449995 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -103197 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 549471 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -16583 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 664863 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 550168 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 80266 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -289920 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 201420 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 143926 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -267088 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -738035 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -620710 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -208449 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -235637 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -16314 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -450413 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 358142 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -449995 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -103197 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 549471 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -16583 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 664863 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 452788 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 80266 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -289920 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 201420 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 143926 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -267088 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -738035 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -620710 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -235637 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -16314 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -450413 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 358142 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -76160 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -449995 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -103197 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 549471 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -16583 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 664863 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 452788 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 80266 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -289920 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 201420 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 143926 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -267088 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -738035 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -620710 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -235637 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 470305 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -16314 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -450413 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 358142 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -449995 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -103197 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 549471 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -16583 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 664863 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 452788 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 80266 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -289920 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 201420 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 143926 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -267088 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 286541 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -738035 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -620710 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -208449 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -235637 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 470305 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -16314 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -450413 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -450036 eQTL 0.0458 -0.0414 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 550168 eQTL 0.0223 -0.0771 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 80266 eQTL 1.53e-14 0.2 0.0256 0.00514 0.00524 0.0491
ENSG00000117013 KCNQ4 -542134 eQTL 1.13e-02 -0.204 0.0803 0.0 0.0 0.0491
ENSG00000131238 PPT1 143926 eQTL 1.09e-27 0.702 0.0624 0.0 0.0 0.0491
ENSG00000164002 EXO5 -267088 eQTL 8.56e-03 -0.129 0.0489 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -208454 eQTL 0.0432 -0.125 0.0618 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -16314 eQTL 1.18e-08 -0.255 0.0444 0.0 0.0054 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -16583 0.000191 0.000178 2.1e-05 4.88e-05 1.81e-05 4.9e-05 0.000136 1.96e-05 0.00012 5.91e-05 0.000145 7.67e-05 0.000199 4.84e-05 2.86e-05 9.31e-05 6.15e-05 9.86e-05 2.79e-05 1.98e-05 4.95e-05 0.000148 0.000119 3.54e-05 0.000173 4.03e-05 5.72e-05 4.25e-05 0.00011 4.5e-05 8.74e-05 6.88e-06 8.44e-06 1.97e-05 2.46e-05 1.54e-05 6.62e-06 9.73e-06 1.21e-05 1.01e-05 4.32e-06 0.000168 1.36e-05 1.25e-06 6.84e-06 1.68e-05 1.91e-05 6.17e-06 4.88e-06
ENSG00000117000 RLF 80266 6.64e-05 5.73e-05 1.01e-05 2.15e-05 4.7e-06 1.81e-05 4.07e-05 4.24e-06 3.23e-05 1.37e-05 3.13e-05 2.1e-05 5.64e-05 1.13e-05 6.69e-06 2.25e-05 1.42e-05 2.11e-05 6.27e-06 5.22e-06 1.15e-05 4.12e-05 2.92e-05 1e-05 4.95e-05 7.7e-06 1.78e-05 8.17e-06 2.78e-05 1.38e-05 2.03e-05 2.45e-06 1.61e-06 5.21e-06 1.06e-05 4.07e-06 2.82e-06 3.27e-06 4.25e-06 3.69e-06 1.7e-06 4.87e-05 4.5e-06 6.6e-07 2.49e-06 4.96e-06 5.2e-06 1.72e-06 1.54e-06
ENSG00000117016 \N -424029 2.77e-06 5.07e-06 3.99e-06 3.42e-06 1.43e-06 8.1e-07 4.27e-06 6.72e-07 2.29e-06 9.75e-07 2.5e-06 1.45e-06 6.61e-06 1.35e-06 9.86e-07 2.57e-06 3e-06 2.4e-06 1.35e-06 1.16e-06 2.91e-06 3.16e-06 3.72e-06 1.01e-06 5.08e-06 1.32e-06 1.88e-06 1.79e-06 3.74e-06 1.97e-06 1.81e-06 2.62e-07 2e-07 1.35e-06 1.71e-06 8.94e-07 9.81e-07 4.59e-07 1.17e-06 3.62e-07 2.84e-07 3.93e-06 4.44e-07 2.07e-07 4.29e-07 3.4e-07 8.3e-07 1.39e-07 2.59e-07
ENSG00000131238 PPT1 143926 1.55e-05 2.8e-05 8.32e-06 1.41e-05 2.58e-06 6.99e-06 2.7e-05 2.27e-06 1.44e-05 6.62e-06 1.57e-05 7.67e-06 2.76e-05 4.27e-06 4.76e-06 9.57e-06 8.14e-06 1e-05 3.31e-06 2.8e-06 6.47e-06 1.58e-05 1.78e-05 4.28e-06 2.74e-05 5.34e-06 8.01e-06 4.09e-06 1.67e-05 8.34e-06 8.77e-06 1.08e-06 9.22e-07 3.57e-06 6.38e-06 2.84e-06 1.87e-06 2.73e-06 2.08e-06 2.5e-06 9.83e-07 2.92e-05 2.68e-06 6.24e-07 1.81e-06 2.97e-06 3.39e-06 8.91e-07 4.15e-07
ENSG00000187801 ZFP69B -208454 7.89e-06 1.54e-05 7.16e-06 9.48e-06 2.4e-06 4.21e-06 1.73e-05 1.75e-06 8.69e-06 4.26e-06 9.41e-06 4.92e-06 1.47e-05 3.8e-06 2.83e-06 6.69e-06 6.42e-06 6.21e-06 2.68e-06 1.92e-06 5.22e-06 9.17e-06 1.05e-05 2.85e-06 1.61e-05 4.27e-06 5.85e-06 2.13e-06 1.1e-05 7.11e-06 4.53e-06 5.85e-07 4.67e-07 2.71e-06 4.14e-06 2.21e-06 1.8e-06 2.06e-06 1.62e-06 1.1e-06 6.13e-07 1.57e-05 1.69e-06 5.88e-07 8.27e-07 2.04e-06 1.94e-06 7.12e-07 5.88e-07
ENSG00000259943 AL050341.2 -16314 0.000191 0.00018 2.13e-05 4.99e-05 1.81e-05 4.93e-05 0.000139 1.99e-05 0.000122 6.01e-05 0.000147 7.81e-05 0.000202 4.91e-05 2.9e-05 9.35e-05 6.25e-05 0.0001 2.83e-05 2.06e-05 5.01e-05 0.00015 0.000121 3.55e-05 0.000176 4.03e-05 5.71e-05 4.3e-05 0.000112 4.57e-05 8.93e-05 6.9e-06 8.51e-06 2.01e-05 2.46e-05 1.57e-05 6.75e-06 9.89e-06 1.22e-05 1.02e-05 4.18e-06 0.000171 1.38e-05 1.25e-06 7.07e-06 1.71e-05 1.92e-05 6.62e-06 5.19e-06
ENSG00000261798 \N 452677 2.61e-06 4.89e-06 3.39e-06 3.18e-06 1.27e-06 7.9e-07 3.31e-06 5.97e-07 1.96e-06 8.51e-07 2.11e-06 1.31e-06 5.72e-06 1.4e-06 9.04e-07 2.34e-06 2.2e-06 2.1e-06 1.46e-06 1.05e-06 2.51e-06 3.02e-06 3.35e-06 9.56e-07 4.81e-06 1.14e-06 1.65e-06 1.44e-06 2.83e-06 1.86e-06 1.31e-06 2.49e-07 2.33e-07 1.25e-06 1.67e-06 1.03e-06 9.52e-07 4.52e-07 1.07e-06 3.28e-07 1.93e-07 3.43e-06 6.22e-07 1.61e-07 3.44e-07 3.5e-07 8.03e-07 4.91e-08 1.97e-07