logo

Genes within 1Mb (chr1:40239121:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 355610 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -78692 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -452527 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -105729 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 546939 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -19115 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 662331 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 547636 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 77734 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -292452 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 198888 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 141394 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -269620 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -740567 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -623242 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -210981 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -238169 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -18846 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -452945 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 355610 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -452527 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -105729 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 546939 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -19115 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 662331 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 450256 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 77734 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -292452 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 198888 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 141394 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -269620 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -740567 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -623242 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -238169 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -18846 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -452945 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 355610 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -78692 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -452527 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -105729 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 546939 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -19115 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 662331 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 450256 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 77734 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -292452 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 198888 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 141394 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -269620 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -740567 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -623242 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -238169 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 467773 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -18846 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -452945 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 355610 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -452527 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -105729 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 546939 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -19115 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 662331 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 450256 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 77734 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -292452 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 198888 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 141394 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -269620 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 284009 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -740567 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -623242 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -210981 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -238169 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 467773 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -18846 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -452945 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -452568 eQTL 0.0457 -0.0414 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 547636 eQTL 0.022 -0.0772 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 77734 eQTL 1.48e-14 0.2 0.0256 0.00529 0.0054 0.0491
ENSG00000117013 KCNQ4 -544666 eQTL 1.07e-02 -0.205 0.0802 0.0 0.0 0.0491
ENSG00000131238 PPT1 141394 eQTL 1.07e-27 0.702 0.0623 0.0 0.0 0.0491
ENSG00000164002 EXO5 -269620 eQTL 8.50e-03 -0.129 0.0488 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -210986 eQTL 0.043 -0.125 0.0617 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -18846 eQTL 1.45e-08 -0.254 0.0444 0.0 0.00428 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -19115 6.23e-05 7.09e-05 1.47e-05 3.21e-05 1.92e-05 3.1e-05 9.8e-05 1.79e-05 8.69e-05 5.91e-05 0.000115 3.99e-05 0.00012 3.72e-05 1.88e-05 5.82e-05 4.57e-05 5.79e-05 2.47e-05 2.15e-05 4.65e-05 8.29e-05 6.88e-05 2.86e-05 0.000112 2.65e-05 4.08e-05 3.92e-05 7.34e-05 4.87e-05 5.67e-05 5.64e-06 9.09e-06 1.79e-05 2.66e-05 1.6e-05 9.07e-06 1.01e-05 1.37e-05 9.23e-06 4.56e-06 7.09e-05 8.9e-06 1.96e-06 7.07e-06 1.14e-05 1.2e-05 6.75e-06 4.74e-06
ENSG00000117000 RLF 77734 4.04e-05 4.26e-05 9.41e-06 2.18e-05 1.07e-05 2.13e-05 6.51e-05 9.72e-06 5.9e-05 3.49e-05 7.21e-05 2.63e-05 7.51e-05 2.29e-05 1.1e-05 3.83e-05 2.94e-05 3.82e-05 1.44e-05 1.32e-05 3.02e-05 5.87e-05 4.56e-05 1.61e-05 7.2e-05 1.62e-05 2.48e-05 2.4e-05 5e-05 3.04e-05 3.63e-05 3.49e-06 5.68e-06 9.81e-06 1.86e-05 1.01e-05 5.69e-06 6.05e-06 8.56e-06 5.13e-06 2.49e-06 5.11e-05 6e-06 8.65e-07 4.77e-06 6.27e-06 8.19e-06 4.21e-06 3.13e-06
ENSG00000117016 \N -426561 2.13e-06 2.34e-06 2.32e-06 1.93e-06 5.79e-07 7.86e-07 2.31e-06 5.6e-07 1.86e-06 1.97e-06 1.96e-06 1.45e-06 3.51e-06 1.36e-06 1.4e-06 2.69e-06 1.57e-06 2.03e-06 1.45e-06 1.15e-06 2.9e-06 3.74e-06 3.44e-06 1.43e-06 4.02e-06 1.33e-06 1.56e-06 1.44e-06 3.06e-06 2e-06 1.93e-06 5.74e-07 5.47e-07 1.29e-06 9.93e-07 8.53e-07 1.07e-06 4.57e-07 1.1e-06 4.26e-07 8.13e-07 2.89e-06 9.9e-07 1.54e-07 3.63e-07 6.75e-07 1e-06 4.25e-07 3.29e-07
ENSG00000131238 PPT1 141394 1.57e-05 2.24e-05 6.97e-06 1.58e-05 6.92e-06 1.34e-05 3.93e-05 6.22e-06 3.18e-05 1.98e-05 3.55e-05 1.58e-05 3.83e-05 1.3e-05 6.95e-06 2.25e-05 1.51e-05 2.26e-05 9.51e-06 8.35e-06 1.92e-05 3.34e-05 2.89e-05 1.06e-05 4.3e-05 8.55e-06 1.56e-05 1.47e-05 3.15e-05 1.73e-05 1.87e-05 2.34e-06 3.46e-06 6.79e-06 1.27e-05 7.06e-06 4.28e-06 3.84e-06 6.05e-06 3.94e-06 2.04e-06 3.1e-05 4.84e-06 5.27e-07 2.93e-06 4.15e-06 5.39e-06 2.7e-06 1.71e-06
ENSG00000187801 ZFP69B -210986 9.54e-06 1.13e-05 5.99e-06 9.74e-06 3.02e-06 6.12e-06 1.87e-05 3.36e-06 1.45e-05 9.83e-06 1.68e-05 7.07e-06 1.85e-05 5.16e-06 5.08e-06 1.06e-05 7.55e-06 1.21e-05 6e-06 5.26e-06 9.16e-06 1.6e-05 1.47e-05 6.73e-06 2.34e-05 5.34e-06 7.94e-06 8.02e-06 1.58e-05 9.42e-06 9.27e-06 1.61e-06 1.91e-06 3.89e-06 6.62e-06 4.4e-06 2.98e-06 2.98e-06 3.56e-06 2.84e-06 1.87e-06 1.48e-05 3.07e-06 4.09e-07 1.95e-06 2.79e-06 3.74e-06 1.44e-06 1.46e-06
ENSG00000259943 AL050341.2 -18846 6.23e-05 7.09e-05 1.47e-05 3.21e-05 1.92e-05 3.1e-05 9.8e-05 1.79e-05 8.69e-05 5.91e-05 0.000116 3.99e-05 0.000121 3.72e-05 1.88e-05 5.88e-05 4.57e-05 5.79e-05 2.47e-05 2.15e-05 4.65e-05 8.36e-05 6.88e-05 2.86e-05 0.000112 2.65e-05 4.08e-05 3.92e-05 7.34e-05 4.87e-05 5.67e-05 5.64e-06 9.09e-06 1.82e-05 2.66e-05 1.63e-05 9.07e-06 1.01e-05 1.37e-05 9.23e-06 4.56e-06 7.09e-05 8.9e-06 1.96e-06 7.07e-06 1.14e-05 1.2e-05 6.62e-06 4.74e-06
ENSG00000261798 \N 450145 1.65e-06 1.58e-06 1.88e-06 1.68e-06 4.82e-07 8.34e-07 1.78e-06 4.04e-07 1.72e-06 1.45e-06 1.89e-06 1.29e-06 3.22e-06 1.11e-06 9.71e-07 2.06e-06 1.26e-06 2.19e-06 1.48e-06 9.89e-07 2.49e-06 3.17e-06 2.64e-06 1.69e-06 3.61e-06 1.22e-06 1.35e-06 1.84e-06 2.16e-06 1.79e-06 1.53e-06 4.84e-07 7.91e-07 1.27e-06 9.11e-07 9.86e-07 9.21e-07 4.6e-07 1.3e-06 3.45e-07 7.64e-07 2.35e-06 7.84e-07 1.85e-07 2.74e-07 3.58e-07 1.13e-06 2.4e-07 3.4e-07