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Genes within 1Mb (chr1:40224271:G:GA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 340760 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -93542 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -467377 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -120579 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 532089 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -33965 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 647481 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 532786 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 62884 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -307302 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 184038 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 126544 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -284470 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -755417 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -638092 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -225831 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -253019 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -33696 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -467795 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 340760 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -467377 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -120579 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 532089 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -33965 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 647481 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 435406 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 62884 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -307302 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 184038 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 126544 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -284470 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -755417 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -638092 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -253019 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -33696 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -467795 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 340760 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -93542 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -467377 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -120579 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 532089 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -33965 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 647481 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 435406 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 62884 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -307302 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 184038 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 126544 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -284470 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -755417 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -638092 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -253019 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 452923 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -33696 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -467795 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 340760 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -467377 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -120579 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 532089 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -33965 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 647481 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 435406 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 62884 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -307302 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 184038 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 126544 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -284470 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 269159 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -755417 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -638092 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -225831 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -253019 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 452923 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -33696 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -467795 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -467418 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 532786 eQTL 0.0266 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 62884 eQTL 2.24e-14 0.2 0.0258 0.00362 0.00343 0.0486
ENSG00000117013 KCNQ4 -559516 eQTL 8.36e-03 -0.213 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 126544 eQTL 1.44e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -284470 eQTL 9.67e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -225836 eQTL 0.0499 -0.122 0.0621 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -33696 eQTL 3.29e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -33965 0.000193 3.89e-05 5.7e-06 1.6e-05 3.02e-06 3.91e-05 4.15e-05 2.9e-06 2.5e-05 1.13e-05 2.99e-05 9.59e-06 4.02e-05 1.26e-05 8.15e-06 2.14e-05 2.12e-05 2.91e-05 5.31e-06 4.14e-06 1.56e-05 3.96e-05 4.27e-05 8.51e-06 4.49e-05 1.31e-05 1.01e-05 8.99e-06 3.49e-05 2.25e-05 2.2e-05 1.65e-06 1.38e-06 5.81e-06 1.27e-05 3.8e-06 2.4e-06 2.4e-06 3.09e-06 1.26e-06 1.67e-06 8.5e-05 5.69e-06 2.5e-07 3.8e-06 5.29e-06 4.04e-06 1.06e-06 1.24e-06
ENSG00000117000 RLF 62884 0.000134 2.37e-05 3.02e-06 9.64e-06 2.44e-06 1.95e-05 2.07e-05 1.33e-06 1.24e-05 5.9e-06 1.43e-05 5.56e-06 1.88e-05 5.09e-06 5.22e-06 1.01e-05 1.31e-05 1.41e-05 2.83e-06 2.59e-06 7.96e-06 1.76e-05 2.09e-05 4.48e-06 2.84e-05 5.72e-06 7.13e-06 4.78e-06 1.72e-05 1.38e-05 9.4e-06 9.9e-07 6.72e-07 3.33e-06 8.09e-06 2.07e-06 1.71e-06 1.84e-06 1.6e-06 6.18e-07 8.78e-07 4.03e-05 3.64e-06 2.62e-07 2.7e-06 2.74e-06 2.6e-06 7.66e-07 4.03e-07
ENSG00000117016 \N -441411 1.29e-06 8.9e-07 3.2e-07 4.08e-07 1.1e-07 4.79e-07 9.43e-07 5.53e-08 4.3e-07 1.89e-07 2.62e-07 1.57e-07 1.05e-06 1.1e-07 2.57e-07 3.79e-07 3.24e-07 4.33e-07 7.27e-08 7.83e-08 2.52e-07 3.95e-07 3.87e-07 4.91e-08 1.47e-06 2.34e-07 6.16e-07 2.18e-07 5.43e-07 8.63e-07 2.73e-07 3.76e-08 3.21e-08 1.54e-07 3.26e-07 3.43e-08 5.51e-08 6.66e-08 6.71e-08 5.24e-08 5.05e-08 6.81e-07 4.18e-08 1.43e-08 3.81e-08 2.71e-08 9.84e-08 4.09e-09 4.91e-08
ENSG00000131238 PPT1 126544 1.46e-05 9.1e-06 1.23e-06 3.8e-06 8.72e-07 5.16e-06 8.88e-06 4.33e-07 5.13e-06 2.44e-06 4.19e-06 2.55e-06 7.2e-06 1.75e-06 1.46e-06 3.9e-06 4.99e-06 3.82e-06 1.42e-06 1.39e-06 2.61e-06 6.58e-06 4.86e-06 1.62e-06 1.14e-05 2.2e-06 2.97e-06 1.79e-06 6.08e-06 6.54e-06 2.79e-06 2.42e-07 5.79e-07 1.82e-06 3.49e-06 9.47e-07 7.91e-07 4.89e-07 9.27e-07 2.31e-07 1.51e-07 8.25e-06 1.42e-06 1.56e-07 9.54e-07 9.54e-07 1.05e-06 2.2e-07 3.01e-07
ENSG00000187801 ZFP69B -225836 4.36e-06 2.6e-06 6.05e-07 1.69e-06 2.76e-07 1.33e-06 2.08e-06 1.59e-07 1.72e-06 6.2e-07 1.76e-06 6.16e-07 2.63e-06 4.11e-07 4.63e-07 1.22e-06 1.56e-06 1.72e-06 6.68e-07 6.44e-07 7.02e-07 2.17e-06 1.71e-06 5.38e-07 3.74e-06 9.49e-07 1.44e-06 9.19e-07 1.87e-06 1.86e-06 7.35e-07 4.75e-08 1.94e-07 6.08e-07 1.43e-06 3.59e-07 2.34e-07 1.67e-07 8.24e-08 8.43e-09 1.85e-07 2.75e-06 5e-07 1.31e-07 3.12e-07 3.3e-07 3.64e-07 3.04e-09 4.52e-08
ENSG00000259943 AL050341.2 -33696 0.000193 3.92e-05 5.7e-06 1.6e-05 3.06e-06 3.91e-05 4.15e-05 2.92e-06 2.53e-05 1.13e-05 3.02e-05 9.57e-06 4.07e-05 1.27e-05 8.24e-06 2.17e-05 2.12e-05 2.95e-05 5.37e-06 4.17e-06 1.59e-05 3.99e-05 4.31e-05 8.48e-06 4.56e-05 1.32e-05 1.02e-05 9.09e-06 3.49e-05 2.28e-05 2.22e-05 1.65e-06 1.38e-06 5.89e-06 1.28e-05 3.83e-06 2.42e-06 2.41e-06 3.15e-06 1.27e-06 1.64e-06 8.5e-05 5.69e-06 2.5e-07 3.8e-06 5.29e-06 4.14e-06 1.12e-06 1.3e-06
ENSG00000261798 \N 435295 1.33e-06 8.81e-07 3.25e-07 4.31e-07 1.08e-07 5.09e-07 9.92e-07 5.53e-08 4.43e-07 2.01e-07 2.68e-07 1.62e-07 1.03e-06 1.1e-07 2.81e-07 3.96e-07 3.52e-07 4.39e-07 7.11e-08 8e-08 2.52e-07 4.14e-07 4.12e-07 5.01e-08 1.52e-06 2.4e-07 6.37e-07 2.19e-07 5.7e-07 9.08e-07 2.83e-07 3.76e-08 3.29e-08 1.52e-07 3.41e-07 3.43e-08 5.35e-08 6.78e-08 6.58e-08 5.35e-08 5.48e-08 7.2e-07 4.3e-08 1.08e-08 3.41e-08 3.87e-08 1.05e-07 4.09e-09 4.91e-08