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Genes within 1Mb (chr1:40216436:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 332925 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -101377 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -475212 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -128414 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 524254 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -41800 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 639646 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 524951 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 55049 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -315137 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 176203 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 118709 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -292305 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -763252 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -645927 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -233666 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -260854 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -41531 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -475630 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 332925 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -475212 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -128414 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 524254 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -41800 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 639646 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 427571 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 55049 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -315137 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 176203 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 118709 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -292305 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -763252 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -645927 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -260854 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -41531 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -475630 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 332925 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -101377 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -475212 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -128414 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 524254 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -41800 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 639646 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 427571 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 55049 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -315137 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 176203 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 118709 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -292305 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -763252 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -645927 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -260854 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 445088 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -41531 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -475630 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 332925 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -475212 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -128414 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 524254 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -41800 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 639646 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 427571 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 55049 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -315137 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 176203 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 118709 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -292305 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 261324 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -763252 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -645927 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -233666 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -260854 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 445088 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -41531 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -475630 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -475253 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 524951 eQTL 0.0266 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 55049 eQTL 2.24e-14 0.2 0.0258 0.00362 0.00343 0.0486
ENSG00000117013 KCNQ4 -567351 eQTL 8.36e-03 -0.213 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 118709 eQTL 1.44e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -292305 eQTL 9.67e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -233671 eQTL 0.0499 -0.122 0.0621 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -41531 eQTL 3.29e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -41800 1.05e-05 1.24e-05 2.36e-06 6.9e-06 2.42e-06 5.21e-06 1.32e-05 2.15e-06 1.06e-05 5.44e-06 1.45e-05 6.14e-06 1.93e-05 3.99e-06 3.4e-06 7.09e-06 6.38e-06 9.69e-06 3.32e-06 3.14e-06 6.79e-06 1.1e-05 1.07e-05 3.99e-06 1.83e-05 4.72e-06 6.34e-06 4.92e-06 1.29e-05 1.16e-05 7.63e-06 1.08e-06 1.22e-06 3.7e-06 5.01e-06 2.9e-06 1.77e-06 2e-06 2.25e-06 1.26e-06 1.16e-06 1.57e-05 1.6e-06 2.5e-07 1.07e-06 1.71e-06 1.73e-06 6.59e-07 5.35e-07
ENSG00000117000 RLF 55049 8.18e-06 9.43e-06 1.3e-06 5.09e-06 2.31e-06 4.07e-06 1.04e-05 1.93e-06 8.98e-06 5.06e-06 1.19e-05 5.16e-06 1.4e-05 3.87e-06 2.28e-06 6.63e-06 4.38e-06 7.27e-06 2.6e-06 2.83e-06 5.16e-06 9e-06 7.64e-06 3.3e-06 1.3e-05 3.87e-06 4.74e-06 3.6e-06 9.48e-06 8.58e-06 5.38e-06 1.07e-06 1.25e-06 3.24e-06 3.69e-06 2.69e-06 1.82e-06 1.98e-06 2.15e-06 9.68e-07 9.26e-07 1.25e-05 1.4e-06 1.9e-07 7.99e-07 1.68e-06 1.28e-06 7.04e-07 4.77e-07
ENSG00000117016 \N -449246 8.21e-07 4.63e-07 8.9e-08 3.19e-07 1.13e-07 1.64e-07 4.68e-07 9.91e-08 3.51e-07 2.06e-07 4.74e-07 3.3e-07 6.77e-07 1.1e-07 1.51e-07 2e-07 2.11e-07 3.56e-07 1.5e-07 9.01e-08 1.68e-07 3.13e-07 3.07e-07 1.25e-07 6.02e-07 2.36e-07 2.08e-07 1.95e-07 2.78e-07 3.8e-07 2.54e-07 7.69e-08 5.73e-08 1.16e-07 1.97e-07 8.75e-08 8.87e-08 6.31e-08 5.54e-08 7.28e-08 3.43e-08 4.16e-07 1.6e-08 7.37e-09 8.43e-08 1.32e-08 1.05e-07 2.99e-09 5.71e-08
ENSG00000131238 PPT1 118709 4.39e-06 4.63e-06 8.29e-07 2.44e-06 1.35e-06 1.19e-06 3.38e-06 1.01e-06 4.2e-06 1.98e-06 4.21e-06 3.3e-06 7.63e-06 1.91e-06 1.3e-06 2.78e-06 2.06e-06 2.88e-06 1.36e-06 9.87e-07 2.55e-06 4.42e-06 3.6e-06 1.38e-06 5.18e-06 1.52e-06 2.15e-06 1.43e-06 4.32e-06 4.14e-06 2.32e-06 5.42e-07 7.92e-07 1.87e-06 1.92e-06 9.21e-07 9.05e-07 4.75e-07 1.08e-06 3.45e-07 4.4e-07 5.47e-06 3.96e-07 1.87e-07 4.38e-07 3.4e-07 6.79e-07 2.87e-07 3.38e-07
ENSG00000187801 ZFP69B -233671 1.43e-06 1.25e-06 2.29e-07 1.18e-06 3.82e-07 5.98e-07 1.47e-06 3.99e-07 1.66e-06 6.24e-07 2.05e-06 8.44e-07 2.6e-06 2.98e-07 5.1e-07 9.97e-07 9.18e-07 1.02e-06 8.19e-07 5.15e-07 7.96e-07 1.92e-06 1.11e-06 5.89e-07 2.38e-06 7.37e-07 9.28e-07 8.91e-07 1.63e-06 1.16e-06 7.84e-07 2.89e-07 2.89e-07 5.82e-07 5.23e-07 5.26e-07 7.4e-07 2.4e-07 4.67e-07 3.15e-07 2.87e-07 1.8e-06 1.24e-07 5.67e-08 3.24e-07 1.23e-07 2.21e-07 3.77e-08 1.58e-07
ENSG00000259943 AL050341.2 -41531 1.07e-05 1.25e-05 2.38e-06 6.97e-06 2.37e-06 5.16e-06 1.33e-05 2.21e-06 1.07e-05 5.52e-06 1.45e-05 6.22e-06 1.96e-05 4.06e-06 3.49e-06 7.21e-06 6.44e-06 9.78e-06 3.32e-06 3.13e-06 6.79e-06 1.11e-05 1.07e-05 4.02e-06 1.85e-05 4.71e-06 6.39e-06 4.97e-06 1.3e-05 1.18e-05 7.58e-06 1.08e-06 1.23e-06 3.7e-06 5.03e-06 3e-06 1.78e-06 1.99e-06 2.25e-06 1.26e-06 1.2e-06 1.58e-05 1.6e-06 2.5e-07 1.09e-06 1.72e-06 1.73e-06 6.83e-07 5.34e-07
ENSG00000261798 \N 427460 8.7e-07 5.18e-07 1.08e-07 3.48e-07 9.45e-08 1.77e-07 5.28e-07 1.21e-07 4.19e-07 2.26e-07 5.93e-07 3.65e-07 7.71e-07 1.23e-07 1.9e-07 2.1e-07 2.98e-07 3.82e-07 1.69e-07 1.31e-07 1.89e-07 3.76e-07 3.3e-07 1.44e-07 6.87e-07 2.39e-07 2.52e-07 2.19e-07 3.58e-07 4.72e-07 3.1e-07 6.06e-08 5.42e-08 1.36e-07 2.61e-07 1.02e-07 1.1e-07 6.97e-08 4.23e-08 5.88e-08 4.49e-08 5.09e-07 2.63e-08 1.56e-08 9.95e-08 1.81e-08 9.98e-08 3.25e-09 5.05e-08