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Genes within 1Mb (chr1:40186292:AG:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 302781 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -131521 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -505356 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -158558 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 494110 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -71944 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 609502 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 494807 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 24905 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -345281 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 146059 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 88565 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -322449 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -793396 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -676071 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -263810 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -290998 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -71675 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -505774 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 302781 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -505356 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -158558 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 494110 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -71944 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 609502 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 397427 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 24905 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -345281 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 146059 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 88565 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -322449 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -793396 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -676071 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -290998 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -71675 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -505774 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 302781 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -131521 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -505356 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -158558 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 494110 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -71944 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 609502 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 397427 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 24905 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -345281 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 146059 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 88565 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -322449 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -793396 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -676071 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -290998 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 414944 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -71675 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -505774 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 302781 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -505356 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -158558 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 494110 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -71944 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 609502 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 397427 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 24905 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -345281 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 146059 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 88565 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -322449 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 231180 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -793396 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -676071 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -263810 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -290998 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 414944 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -71675 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -505774 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -505397 eQTL 0.0452 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 494807 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 24905 eQTL 2.08e-14 0.201 0.0258 0.00388 0.00369 0.0486
ENSG00000117013 KCNQ4 -597495 eQTL 8.34e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 88565 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -322449 eQTL 9.41e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -71675 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -71944 9.86e-06 1.27e-05 4.42e-06 1.12e-05 2.42e-06 4.37e-06 1.81e-05 1.18e-06 8.41e-06 4.75e-06 1.05e-05 5.35e-06 1.34e-05 3.78e-06 1.4e-06 6.09e-06 4.79e-06 6.32e-06 2.24e-06 1.15e-06 4.52e-06 8.06e-06 1.29e-05 2.56e-06 2.11e-05 3.62e-06 4.88e-06 1.55e-06 1.13e-05 8.74e-06 6.36e-06 5.74e-07 6.12e-07 2.58e-06 5.86e-06 1.56e-06 1.78e-06 2.35e-06 9.07e-07 6.99e-07 7.14e-07 2.02e-05 1.59e-06 2.23e-06 7.67e-07 1.17e-06 1.4e-06 6.6e-07 5.44e-07
ENSG00000117000 RLF 24905 1.23e-05 1.55e-05 5.75e-06 1.17e-05 2.58e-06 5.36e-06 2.07e-05 1.24e-06 1e-05 5.12e-06 1.23e-05 6.11e-06 1.66e-05 3.8e-06 2.11e-06 6.36e-06 6.49e-06 7.74e-06 2.55e-06 1.51e-06 5.1e-06 9.58e-06 1.59e-05 3.16e-06 2.46e-05 4.31e-06 6.39e-06 1.73e-06 1.34e-05 1.05e-05 7.54e-06 8.06e-07 6.46e-07 2.71e-06 6.37e-06 1.84e-06 1.78e-06 2.4e-06 8.58e-07 8.46e-07 7.46e-07 2.57e-05 2.34e-06 1.96e-06 8.09e-07 1.49e-06 1.74e-06 6.82e-07 6.2e-07
ENSG00000117016 \N -479390 1.29e-06 9.39e-07 2.99e-07 1.96e-06 1.18e-07 5.83e-07 1.51e-06 7.98e-08 1.11e-06 2.88e-07 1.41e-06 5.73e-07 2.02e-06 2.5e-07 1.07e-07 4.84e-07 2.98e-07 5.69e-07 3.5e-07 1.55e-07 3.39e-07 6.27e-07 9.01e-07 3.32e-07 2.3e-06 2.41e-07 6.37e-07 2.24e-07 1.01e-06 1.3e-06 5.62e-07 3.89e-08 3.59e-08 2.98e-07 8.71e-07 3.71e-07 1.97e-07 1.41e-07 5.84e-08 7.65e-08 4.64e-08 1.62e-06 6.81e-08 9.51e-07 2.82e-08 1.42e-08 1.04e-07 3.92e-09 4.88e-08
ENSG00000131238 PPT1 88565 9.27e-06 1.26e-05 4.28e-06 1.04e-05 2.35e-06 4.23e-06 1.57e-05 1.09e-06 7.72e-06 4.24e-06 1.05e-05 5.09e-06 1.27e-05 3.87e-06 1.03e-06 5.78e-06 4.12e-06 5.56e-06 2.25e-06 1.19e-06 4.51e-06 7.85e-06 1.2e-05 2.28e-06 1.98e-05 3.31e-06 4.92e-06 1.63e-06 1.02e-05 8.32e-06 5.69e-06 5.87e-07 5.85e-07 2.39e-06 5.59e-06 1.35e-06 1.79e-06 2.15e-06 9.31e-07 5.79e-07 7.14e-07 1.88e-05 1.49e-06 2.4e-06 6.91e-07 1.04e-06 1.28e-06 5.2e-07 4.83e-07
ENSG00000187801 \N -263815 4.29e-06 4.75e-06 1.32e-06 4.37e-06 8.52e-07 1.47e-06 4.62e-06 3.98e-07 2.73e-06 1.1e-06 3.34e-06 2.2e-06 5.73e-06 1.18e-06 4.96e-07 2.08e-06 9.83e-07 2.12e-06 1.36e-06 7.68e-07 1.37e-06 3.12e-06 4.56e-06 1.17e-06 5.16e-06 1.28e-06 1.82e-06 1.04e-06 3.78e-06 4.23e-06 1.98e-06 1.29e-07 1.7e-07 1.26e-06 2.07e-06 1.03e-06 9.55e-07 4.4e-07 4.8e-07 2.01e-07 2.89e-07 5.76e-06 3.96e-07 2.53e-06 2.5e-07 3.27e-07 4.02e-07 8.08e-08 1.08e-07
ENSG00000259943 AL050341.2 -71675 9.86e-06 1.27e-05 4.42e-06 1.12e-05 2.4e-06 4.35e-06 1.81e-05 1.18e-06 8.41e-06 4.75e-06 1.05e-05 5.35e-06 1.34e-05 3.79e-06 1.4e-06 6.09e-06 4.79e-06 6.32e-06 2.24e-06 1.18e-06 4.52e-06 8.06e-06 1.29e-05 2.6e-06 2.11e-05 3.62e-06 4.88e-06 1.55e-06 1.15e-05 8.74e-06 6.36e-06 5.74e-07 6.12e-07 2.58e-06 5.86e-06 1.59e-06 1.78e-06 2.35e-06 9.07e-07 6.99e-07 7.14e-07 2.02e-05 1.59e-06 2.23e-06 7.67e-07 1.17e-06 1.4e-06 6.6e-07 5.44e-07
ENSG00000261798 \N 397316 1.86e-06 1.34e-06 4.64e-07 2.65e-06 3.47e-07 7.21e-07 1.33e-06 2e-07 1.68e-06 3.83e-07 2.08e-06 7.63e-07 2.7e-06 2.87e-07 2.81e-07 9.33e-07 7.47e-07 9.58e-07 7.73e-07 4.36e-07 7.95e-07 1.45e-06 1.56e-06 6.35e-07 2.37e-06 4.28e-07 9.31e-07 4.4e-07 1.62e-06 1.8e-06 8.18e-07 3.68e-08 4.97e-08 6.95e-07 1.43e-06 4.28e-07 5.76e-07 2.97e-07 4.55e-08 2.59e-08 4.92e-08 2.89e-06 1.39e-07 1.38e-06 7.93e-08 7.91e-08 1.18e-07 1.93e-09 4.83e-08