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Genes within 1Mb (chr1:40185206:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 301695 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -132607 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -506442 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -159644 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 493024 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -73030 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 608416 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 493721 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 23819 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -346367 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 144973 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 87479 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -323535 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -794482 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -677157 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -264896 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -292084 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -72761 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -506860 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 301695 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -506442 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -159644 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 493024 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -73030 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 608416 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 396341 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 23819 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -346367 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 144973 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 87479 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -323535 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -794482 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -677157 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -292084 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -72761 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -506860 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 301695 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -132607 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -506442 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -159644 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 493024 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -73030 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 608416 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 396341 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 23819 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -346367 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 144973 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 87479 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -323535 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -794482 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -677157 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -292084 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 413858 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -72761 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -506860 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 301695 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -506442 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -159644 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 493024 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -73030 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 608416 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 396341 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 23819 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -346367 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 144973 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 87479 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -323535 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 230094 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -794482 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -677157 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -264896 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -292084 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 413858 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -72761 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -506860 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -506483 eQTL 0.0452 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 493721 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 23819 eQTL 2.08e-14 0.201 0.0258 0.00388 0.00369 0.0486
ENSG00000117013 KCNQ4 -598581 eQTL 8.34e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 87479 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -323535 eQTL 9.41e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -72761 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -73030 5.53e-06 6.3e-06 5.84e-07 3.6e-06 1.75e-06 1.52e-06 7.69e-06 1.1e-06 4.59e-06 2.86e-06 7.78e-06 2.91e-06 9.46e-06 2.15e-06 1.06e-06 3.99e-06 2.76e-06 3.84e-06 1.47e-06 1.21e-06 2.71e-06 5.5e-06 4.66e-06 1.81e-06 9.11e-06 2.07e-06 2.33e-06 1.55e-06 5.55e-06 6.54e-06 2.93e-06 3.85e-07 4.82e-07 2.2e-06 1.97e-06 1.09e-06 1.06e-06 4.51e-07 8.54e-07 5.17e-07 6.55e-07 8.12e-06 4.73e-07 1.69e-07 5.95e-07 1.16e-06 1.01e-06 7.21e-07 3.6e-07
ENSG00000117000 RLF 23819 1.34e-05 1.46e-05 2.46e-06 8.32e-06 2.4e-06 6.28e-06 1.85e-05 2.13e-06 1.39e-05 6.72e-06 1.82e-05 7.07e-06 2.44e-05 5.48e-06 4.27e-06 8.62e-06 8.1e-06 1.19e-05 3.74e-06 3.23e-06 6.92e-06 1.3e-05 1.36e-05 4.28e-06 2.43e-05 4.47e-06 7.29e-06 5.45e-06 1.5e-05 1.42e-05 9.59e-06 1.08e-06 1.32e-06 4e-06 6.02e-06 3.35e-06 1.79e-06 2.13e-06 2.22e-06 1.41e-06 1.14e-06 1.82e-05 1.84e-06 2.03e-07 9.99e-07 2.15e-06 2.33e-06 7.23e-07 4.78e-07
ENSG00000117016 \N -480476 4.37e-07 2.17e-07 6.41e-08 2.41e-07 1.07e-07 1.28e-07 3.25e-07 6.75e-08 1.96e-07 1.11e-07 2.18e-07 1.72e-07 3.18e-07 8.54e-08 6.53e-08 1.01e-07 7.3e-08 2.21e-07 7.27e-08 6.58e-08 1.39e-07 1.9e-07 2e-07 3.41e-08 3.27e-07 1.71e-07 1.31e-07 1.42e-07 1.47e-07 1.89e-07 1.35e-07 5.32e-08 4.74e-08 9.81e-08 1.27e-07 4.68e-08 6.04e-08 5.53e-08 6.29e-08 6.55e-08 5.1e-08 2.19e-07 3.4e-08 1.74e-08 4.06e-08 9.44e-09 9.25e-08 2.75e-09 4.55e-08
ENSG00000131238 PPT1 87479 4.87e-06 5.12e-06 8.75e-07 3.02e-06 1.62e-06 1.6e-06 5.27e-06 1.04e-06 5.25e-06 2.44e-06 6.15e-06 3.34e-06 7.51e-06 1.94e-06 1.43e-06 3.71e-06 1.93e-06 3.69e-06 1.47e-06 1.02e-06 3.02e-06 4.78e-06 4.49e-06 1.44e-06 8.15e-06 1.74e-06 2.55e-06 1.73e-06 4.41e-06 4.67e-06 2.81e-06 4.91e-07 7.32e-07 1.53e-06 2.09e-06 9.86e-07 9.67e-07 4.58e-07 9.86e-07 3.57e-07 4.57e-07 6.29e-06 3.65e-07 1.55e-07 4.19e-07 6.91e-07 1.09e-06 4.27e-07 3.23e-07
ENSG00000187801 \N -264901 1.26e-06 9.31e-07 2.84e-07 5.65e-07 2.31e-07 4.57e-07 1.21e-06 3.45e-07 1.14e-06 3.66e-07 1.35e-06 5.64e-07 1.73e-06 2.55e-07 4.16e-07 6.57e-07 8.26e-07 5.66e-07 4.65e-07 4.68e-07 3.87e-07 1.05e-06 8.52e-07 5.36e-07 2.01e-06 3.02e-07 6.81e-07 5.44e-07 1.04e-06 1.23e-06 5.26e-07 5.06e-08 1.76e-07 5.21e-07 5.17e-07 3.91e-07 3.62e-07 1.47e-07 1.49e-07 4.09e-08 2.32e-07 1.57e-06 5.29e-08 5.72e-08 1.7e-07 7.57e-08 2.22e-07 8.67e-08 7.91e-08
ENSG00000259943 AL050341.2 -72761 5.64e-06 6.26e-06 5.84e-07 3.51e-06 1.73e-06 1.52e-06 7.61e-06 1.1e-06 4.59e-06 2.85e-06 7.78e-06 2.95e-06 9.46e-06 2.18e-06 1.02e-06 3.97e-06 2.78e-06 3.8e-06 1.51e-06 1.21e-06 2.77e-06 5.54e-06 4.76e-06 1.84e-06 9.25e-06 2.07e-06 2.39e-06 1.55e-06 5.6e-06 6.57e-06 3.01e-06 3.85e-07 4.82e-07 2.19e-06 1.97e-06 1.09e-06 1.06e-06 4.51e-07 8.54e-07 5.17e-07 6.93e-07 8.22e-06 4.91e-07 1.68e-07 5.64e-07 1.16e-06 1.01e-06 7.36e-07 3.6e-07
ENSG00000261798 \N 396230 7.87e-07 4.63e-07 8.02e-08 3.58e-07 1.07e-07 1.97e-07 5.13e-07 9.69e-08 3.32e-07 2.01e-07 4.88e-07 3.3e-07 6e-07 1.07e-07 1.45e-07 1.76e-07 2.34e-07 3.3e-07 1.51e-07 9.01e-08 1.89e-07 2.96e-07 3.11e-07 1.21e-07 6.87e-07 2.32e-07 2.24e-07 1.88e-07 2.98e-07 4.61e-07 2.11e-07 7.79e-08 5.38e-08 1.25e-07 3.04e-07 6.94e-08 8.87e-08 8.04e-08 5.89e-08 7.39e-08 4.45e-08 4.16e-07 2.67e-08 1.62e-08 9.64e-08 1.37e-08 1.03e-07 1.22e-08 5.54e-08