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Genes within 1Mb (chr1:40126346:G:GT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 242835 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -191467 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -565302 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -218504 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 434164 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -131890 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 549556 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 434861 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -35041 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -405227 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 86113 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 28619 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -382395 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -853342 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -736017 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -323756 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -350944 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -131621 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -565720 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 242835 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -191467 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -565302 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -218504 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 434164 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -131890 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 549556 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 337481 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -35041 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -405227 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 86113 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 28619 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -382395 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -853342 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -736017 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -350944 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 354998 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -131621 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -565720 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -565343 eQTL 0.0444 -0.0421 0.0209 0.0 0.0 0.0481
ENSG00000116983 HPCAL4 434861 eQTL 0.0336 -0.0724 0.034 0.0 0.0 0.0481
ENSG00000117000 RLF -35041 eQTL 3.15e-14 0.2 0.0259 0.00256 0.00248 0.0481
ENSG00000117013 KCNQ4 -657441 eQTL 5.12e-03 -0.227 0.081 0.0 0.0 0.0481
ENSG00000131238 PPT1 28619 eQTL 1.68e-27 0.707 0.063 0.0 0.0 0.0481
ENSG00000164002 EXO5 -382395 eQTL 1.65e-02 -0.119 0.0493 0.0 0.0 0.0481
ENSG00000168389 MFSD2A 171234 eQTL 0.0342 -0.0851 0.0401 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -131621 eQTL 6.71e-08 -0.244 0.0449 0.0 0.0 0.0481
ENSG00000261798 AL033527.3 337370 eQTL 0.0493 0.155 0.0789 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -131890 9.25e-06 1.13e-05 3.55e-06 6.18e-06 1.83e-06 5.06e-06 1.03e-05 1.05e-06 8.81e-06 5.3e-06 1.08e-05 5.9e-06 1.25e-05 3.63e-06 3.54e-06 6.99e-06 4.57e-06 7.77e-06 2.47e-06 2.13e-06 4.94e-06 8.39e-06 9.64e-06 3.2e-06 1.29e-05 4.51e-06 4.45e-06 2.5e-06 9.36e-06 8.01e-06 5.07e-06 9.58e-07 7.92e-07 2.02e-06 5.01e-06 2.07e-06 1.4e-06 1.46e-06 1.38e-06 1.01e-06 8.22e-07 1.57e-05 2.27e-06 1.57e-07 7.89e-07 1.68e-06 1.8e-06 7.34e-07 4.32e-07
ENSG00000117000 RLF -35041 5.67e-05 3.98e-05 6.85e-06 1.53e-05 4e-06 1.61e-05 4.75e-05 3.09e-06 2.47e-05 1.02e-05 3.92e-05 1.61e-05 5.64e-05 1.26e-05 6.33e-06 1.61e-05 1.96e-05 2.21e-05 6.45e-06 4.81e-06 1.27e-05 2.94e-05 3.62e-05 7.77e-06 3.96e-05 7.92e-06 9.55e-06 8.12e-06 3.51e-05 2.64e-05 1.87e-05 1.34e-06 1.87e-06 4.49e-06 1.06e-05 4.5e-06 2.04e-06 2.72e-06 3.2e-06 2.69e-06 1.5e-06 6.11e-05 4.58e-06 1.61e-07 2.06e-06 3.13e-06 3.49e-06 1.11e-06 1.38e-06
ENSG00000117016 \N -539336 1.34e-06 2.12e-06 6.33e-07 1.2e-06 1.54e-07 6.02e-07 1.53e-06 7.79e-08 1.41e-06 5.06e-07 1.41e-06 8.15e-07 1.96e-06 4.13e-07 4.72e-07 9.92e-07 9.95e-07 1.08e-06 6.18e-07 2.65e-07 4.19e-07 1.33e-06 8.52e-07 6.34e-07 2.32e-06 4.36e-07 8.99e-07 3.89e-07 1.15e-06 1.21e-06 5.58e-07 7.4e-08 5.73e-08 4.57e-07 5.38e-07 2.58e-07 5.17e-07 1.24e-07 8.06e-08 1.86e-08 2.87e-08 1.58e-06 4.01e-07 1.51e-07 2.88e-07 1.11e-07 3.2e-07 8.08e-08 4.68e-08
ENSG00000131238 PPT1 28619 6.14e-05 4.26e-05 7.04e-06 1.55e-05 4.49e-06 1.72e-05 5.03e-05 3.34e-06 2.7e-05 1.1e-05 4.26e-05 1.74e-05 6.07e-05 1.35e-05 6.73e-06 1.75e-05 2.12e-05 2.33e-05 6.85e-06 5.18e-06 1.36e-05 3.17e-05 3.77e-05 8.4e-06 4.24e-05 8.34e-06 1.05e-05 8.71e-06 3.69e-05 2.81e-05 2.03e-05 1.41e-06 1.96e-06 4.84e-06 1.11e-05 4.48e-06 2.18e-06 2.7e-06 3.46e-06 2.79e-06 1.58e-06 6.36e-05 4.84e-06 1.88e-07 2.07e-06 3.27e-06 3.8e-06 1.26e-06 1.52e-06
ENSG00000259943 AL050341.2 -131621 9.28e-06 1.13e-05 3.55e-06 6.21e-06 1.85e-06 5.06e-06 1.03e-05 1.07e-06 8.81e-06 5.35e-06 1.08e-05 5.9e-06 1.26e-05 3.69e-06 3.54e-06 6.99e-06 4.57e-06 7.79e-06 2.47e-06 2.15e-06 4.96e-06 8.39e-06 9.64e-06 3.2e-06 1.31e-05 4.51e-06 4.51e-06 2.51e-06 9.48e-06 8.01e-06 5.14e-06 9.42e-07 7.92e-07 2.02e-06 5.03e-06 2.06e-06 1.39e-06 1.46e-06 1.38e-06 1e-06 8.22e-07 1.58e-05 2.34e-06 1.63e-07 8.14e-07 1.67e-06 1.79e-06 7.34e-07 4.32e-07
ENSG00000261798 AL033527.3 337370 1.64e-06 3.64e-06 1.34e-06 1.86e-06 3.76e-07 7.53e-07 1.55e-06 2.03e-07 1.6e-06 9.02e-07 1.76e-06 1.35e-06 2.72e-06 1.4e-06 1.14e-06 1.7e-06 1.23e-06 2.25e-06 5.75e-07 6.33e-07 6.41e-07 1.92e-06 1.56e-06 1e-06 3.36e-06 1.01e-06 1.2e-06 7.09e-07 1.74e-06 1.81e-06 7.39e-07 7.32e-08 1.34e-07 6.16e-07 1.27e-06 4.45e-07 7.11e-07 2.71e-07 3.89e-07 2.64e-07 1.44e-07 3e-06 6.72e-07 1.68e-07 3.42e-07 3.22e-07 8.74e-07 6.02e-08 7.91e-08