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Genes within 1Mb (chr1:40123957:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 240446 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -193856 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -567691 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -220893 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 431775 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -134279 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 547167 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 432472 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -37430 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -407616 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 83724 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 26230 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -384784 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -855731 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -738406 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -326145 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -353333 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -134010 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -568109 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 240446 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -193856 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -567691 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -220893 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 431775 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -134279 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 547167 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 335092 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -37430 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -407616 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 83724 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 26230 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -384784 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -855731 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -738406 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -353333 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 352609 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -134010 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -568109 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -567732 eQTL 0.0456 -0.0419 0.0209 0.0 0.0 0.0481
ENSG00000116983 HPCAL4 432472 eQTL 0.0329 -0.0727 0.034 0.0 0.0 0.0481
ENSG00000117000 RLF -37430 eQTL 3.13e-14 0.2 0.0259 0.00257 0.00249 0.0481
ENSG00000117013 KCNQ4 -659830 eQTL 5.15e-03 -0.227 0.081 0.0 0.0 0.0481
ENSG00000131238 PPT1 26230 eQTL 1.87e-27 0.706 0.063 0.0 0.0 0.0481
ENSG00000164002 EXO5 -384784 eQTL 1.60e-02 -0.119 0.0493 0.0 0.0 0.0481
ENSG00000168389 MFSD2A 168845 eQTL 0.0322 -0.0861 0.0401 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -134010 eQTL 6.06e-08 -0.245 0.0449 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -134279 7.14e-06 5.79e-06 6.49e-07 3.85e-06 1.59e-06 1.92e-06 8.61e-06 1.07e-06 4.65e-06 2.82e-06 6.44e-06 3.33e-06 9.42e-06 3.14e-06 9.55e-07 3.78e-06 2.72e-06 3.71e-06 1.72e-06 1.58e-06 2.74e-06 5.15e-06 4.7e-06 1.97e-06 9.1e-06 2.05e-06 2.92e-06 1.78e-06 5.66e-06 5.02e-06 2.63e-06 4.97e-07 7.23e-07 2.39e-06 2.22e-06 1.17e-06 1.08e-06 5.46e-07 1.38e-06 8.62e-07 6.6e-07 7.48e-06 1.09e-06 1.6e-07 7.74e-07 9.94e-07 1.06e-06 6.72e-07 4.38e-07
ENSG00000117000 RLF -37430 2.73e-05 2.37e-05 4.41e-06 1.31e-05 3.83e-06 1.01e-05 3.22e-05 3.69e-06 2.08e-05 9.96e-06 2.55e-05 1.01e-05 3.48e-05 9.95e-06 5.59e-06 1.25e-05 1.22e-05 1.98e-05 6.32e-06 5.17e-06 9.96e-06 2.19e-05 2.29e-05 6.36e-06 3.46e-05 6.12e-06 9.29e-06 8.79e-06 2.39e-05 1.73e-05 1.39e-05 1.63e-06 2.23e-06 5.74e-06 9.01e-06 4.48e-06 2.15e-06 2.88e-06 4e-06 2.67e-06 1.69e-06 2.67e-05 2.99e-06 2.8e-07 1.99e-06 2.97e-06 3.3e-06 1.47e-06 1.23e-06
ENSG00000117016 \N -541725 3.53e-07 1.36e-07 6.28e-08 2.35e-07 1.01e-07 8.75e-08 2.5e-07 5.66e-08 1.5e-07 7.6e-08 1.73e-07 1.23e-07 2.38e-07 8.15e-08 6.27e-08 7.89e-08 4.12e-08 1.72e-07 7.27e-08 8e-08 1.18e-07 1.39e-07 1.62e-07 3.68e-08 2.17e-07 1.23e-07 1.2e-07 1.12e-07 1.32e-07 1.1e-07 1.09e-07 5.32e-08 4.98e-08 1.01e-07 4.41e-08 3.11e-08 5.71e-08 7.92e-08 4.04e-08 5.12e-08 8.75e-08 1.52e-07 3.31e-08 1.53e-08 5.4e-08 1.01e-08 8.67e-08 0.0 4.8e-08
ENSG00000131238 PPT1 26230 3.27e-05 2.8e-05 5.65e-06 1.44e-05 5.05e-06 1.26e-05 3.84e-05 3.9e-06 2.55e-05 1.23e-05 3.13e-05 1.38e-05 3.96e-05 1.17e-05 6.27e-06 1.54e-05 1.5e-05 2.29e-05 7.36e-06 5.73e-06 1.28e-05 2.7e-05 2.69e-05 7.65e-06 3.91e-05 7.34e-06 1.14e-05 1.05e-05 2.83e-05 2.09e-05 1.7e-05 1.63e-06 2.43e-06 6.68e-06 1.03e-05 5.16e-06 2.68e-06 3.18e-06 4.54e-06 2.93e-06 1.7e-06 3.18e-05 3.43e-06 3.33e-07 2.1e-06 3.47e-06 3.74e-06 1.49e-06 1.46e-06
ENSG00000259943 AL050341.2 -134010 7.22e-06 5.69e-06 6.49e-07 3.88e-06 1.59e-06 1.92e-06 8.61e-06 1.09e-06 4.67e-06 2.8e-06 6.45e-06 3.37e-06 9.37e-06 3.14e-06 9.73e-07 3.78e-06 2.72e-06 3.71e-06 1.75e-06 1.63e-06 2.74e-06 5.26e-06 4.72e-06 1.97e-06 9.1e-06 2.05e-06 2.92e-06 1.74e-06 5.87e-06 5.02e-06 2.73e-06 4.97e-07 7.03e-07 2.43e-06 2.22e-06 1.13e-06 1.06e-06 5.46e-07 1.37e-06 8.62e-07 6.6e-07 7.41e-06 1.09e-06 1.6e-07 7.12e-07 9.77e-07 1.02e-06 6.72e-07 4.53e-07
ENSG00000261798 \N 334981 1.29e-06 7.56e-07 2.75e-07 5.11e-07 1.18e-07 4.11e-07 1.02e-06 1.65e-07 8.32e-07 3.12e-07 9.92e-07 5.55e-07 1.48e-06 2.57e-07 4.55e-07 4.12e-07 5.41e-07 5.31e-07 4.54e-07 5.57e-07 2.72e-07 5.76e-07 5.63e-07 4.61e-07 1.79e-06 2.64e-07 5.56e-07 4.06e-07 7.61e-07 9.3e-07 4.47e-07 5.06e-08 2.24e-07 5.39e-07 3.66e-07 3.02e-07 3.4e-07 1.54e-07 4.04e-07 3.12e-07 2.85e-07 9.59e-07 9.55e-08 1.27e-08 1.84e-07 8.9e-08 1.71e-07 8.88e-08 6.46e-08