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Genes within 1Mb (chr1:40071893:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 188382 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -245920 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -619755 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -272957 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 379711 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -186343 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 495103 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 380408 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -89494 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -459680 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 990577 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 31660 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -25834 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -436848 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -907795 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -790470 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -378209 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -405397 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -186074 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -620173 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 188382 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -245920 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -619755 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -272957 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 379711 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -186343 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 495103 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 283028 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -89494 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -459680 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 990577 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 31660 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -25834 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -436848 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -907795 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -790470 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -405397 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 300545 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -186074 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -620173 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -619796 eQTL 0.0178 -0.0498 0.021 0.00166 0.0 0.0481
ENSG00000116981 NT5C1A 399855 pQTL 0.0205 0.0657 0.0283 0.00108 0.0 0.0517
ENSG00000116983 HPCAL4 380408 eQTL 0.0291 -0.0747 0.0342 0.0 0.0 0.0481
ENSG00000117000 RLF -89494 eQTL 7.08e-11 0.173 0.0262 0.0 0.0 0.0481
ENSG00000117013 KCNQ4 -711894 eQTL 2.06e-02 -0.189 0.0815 0.0 0.0 0.0481
ENSG00000131238 PPT1 -25834 eQTL 2.97e-28 0.719 0.0632 0.00251 0.0 0.0481
ENSG00000164002 EXO5 -436848 eQTL 1.48e-02 -0.121 0.0496 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -186074 eQTL 5.58e-06 -0.207 0.0453 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -186343 1.13e-06 8.9e-07 2.54e-07 9.29e-07 9.23e-08 3.12e-07 6.52e-07 9.78e-08 7.56e-07 3.05e-07 7.67e-07 4.94e-07 1.37e-06 2.5e-07 3.31e-07 2.89e-07 6.67e-07 5.48e-07 3.5e-07 6.34e-07 2.35e-07 3.95e-07 5.87e-07 3.24e-07 1.39e-06 3.91e-07 3.04e-07 7.22e-07 6.19e-07 5.99e-07 4.02e-07 2.31e-07 1.08e-07 6.58e-07 3.26e-07 6.94e-08 4.79e-07 1.92e-07 8.06e-08 4.09e-08 2.39e-07 7.04e-07 7.23e-08 2.66e-07 1.75e-07 1.59e-07 2.41e-07 3.25e-09 5.52e-08
ENSG00000117000 RLF -89494 4.48e-06 5.78e-06 1.17e-06 3.45e-06 1.73e-06 1.62e-06 8.17e-06 1.09e-06 5.05e-06 2.81e-06 6.14e-06 2.94e-06 7.66e-06 1.9e-06 1.43e-06 3.84e-06 1.84e-06 3.89e-06 1.63e-06 2.83e-06 2.71e-06 5.54e-06 5.56e-06 2.06e-06 8.15e-06 2.25e-06 2.27e-06 2.81e-06 5.55e-06 4.3e-06 2.68e-06 1.11e-06 7.31e-07 2.61e-06 2.13e-06 9.01e-07 1.11e-06 1.42e-06 9.24e-07 4.89e-07 8.99e-07 5.67e-06 7.18e-07 5.91e-07 6.78e-07 1.63e-06 8.82e-07 5.52e-07 1.74e-07
ENSG00000117016 \N -593789 2.6e-07 1.08e-07 3.39e-08 1.78e-07 1.02e-07 9.05e-08 1.36e-07 5.29e-08 1.36e-07 4.23e-08 1.59e-07 7.6e-08 1.21e-07 6.07e-08 4.89e-08 7.76e-08 5.12e-08 1.06e-07 5.12e-08 3.29e-08 1.03e-07 1.31e-07 1.31e-07 4.99e-08 1.33e-07 1.13e-07 1.11e-07 8.45e-08 1.05e-07 1.09e-07 9.5e-08 3.84e-08 2.74e-08 8.25e-08 9.69e-08 4.14e-08 5.26e-08 9.2e-08 8.14e-08 3.09e-08 3.44e-08 1.4e-07 4.23e-08 1.26e-08 1.01e-07 1.75e-08 1.26e-07 4.7e-09 4.61e-08
ENSG00000131238 PPT1 -25834 2.73e-05 3.14e-05 5.99e-06 1.51e-05 5.74e-06 1.27e-05 3.97e-05 4.99e-06 3.01e-05 1.53e-05 3.69e-05 1.77e-05 4.8e-05 1.17e-05 6.21e-06 1.79e-05 1.53e-05 2.48e-05 7.49e-06 7.09e-06 1.4e-05 3.37e-05 2.92e-05 9.54e-06 4.24e-05 8.34e-06 1.33e-05 1.29e-05 3.09e-05 2.15e-05 1.73e-05 1.64e-06 2.24e-06 7.37e-06 1.14e-05 5.84e-06 3.13e-06 3.18e-06 4.35e-06 3.36e-06 1.78e-06 3.54e-05 2.95e-06 4.64e-07 2.7e-06 4.34e-06 4.08e-06 1.8e-06 1.5e-06
ENSG00000259943 AL050341.2 -186074 1.17e-06 8.9e-07 2.56e-07 9.29e-07 9.23e-08 3.12e-07 6.52e-07 9.78e-08 7.56e-07 3.05e-07 7.67e-07 5.01e-07 1.37e-06 2.5e-07 3.31e-07 2.89e-07 6.67e-07 5.48e-07 3.5e-07 6.34e-07 2.35e-07 3.95e-07 5.81e-07 3.24e-07 1.39e-06 3.91e-07 3.04e-07 7.22e-07 6.19e-07 5.99e-07 4.02e-07 2.46e-07 1.18e-07 6.61e-07 3.29e-07 6.94e-08 4.82e-07 2.03e-07 8.06e-08 4.09e-08 2.17e-07 7.2e-07 7.23e-08 2.66e-07 1.67e-07 1.59e-07 2.41e-07 3.25e-09 5.52e-08