logo

Genes within 1Mb (chr1:40066332:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 182821 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -251481 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -625316 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -278518 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 374150 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -191904 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 489542 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 374847 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -95055 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -465241 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 985016 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 26099 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -31395 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -442409 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -913356 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -796031 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -383770 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -410958 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -191635 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -625734 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 182821 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -251481 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -625316 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -278518 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 374150 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -191904 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 489542 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 277467 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -95055 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -465241 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 985016 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 26099 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -31395 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -442409 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -913356 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -796031 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -410958 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 294984 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -191635 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -625734 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -625357 eQTL 0.017 -0.0495 0.0207 0.00163 0.0 0.0486
ENSG00000116981 NT5C1A 394294 pQTL 0.0234 0.0639 0.0282 0.00105 0.0 0.052
ENSG00000116983 HPCAL4 374847 eQTL 0.0412 -0.0689 0.0337 0.0 0.0 0.0486
ENSG00000117000 RLF -95055 eQTL 4.65e-11 0.172 0.0258 0.0 0.0 0.0486
ENSG00000117013 KCNQ4 -717455 eQTL 3.68e-02 -0.168 0.0804 0.0 0.0 0.0486
ENSG00000131238 PPT1 -31395 eQTL 7.86e-28 0.704 0.0623 0.00185 0.0 0.0486
ENSG00000164002 EXO5 -442409 eQTL 1.98e-02 -0.114 0.0489 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -191635 eQTL 8.04e-06 -0.201 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -191904 6.66e-06 2.12e-06 2.43e-07 1.76e-06 2.1e-07 7.89e-07 1.24e-06 2.07e-07 1.48e-06 4.48e-07 1.84e-06 5.69e-07 2.62e-06 2.96e-07 5.4e-07 7.41e-07 7.91e-07 1.3e-06 6.62e-07 5.13e-07 5.8e-07 1.74e-06 1.18e-06 6.06e-07 1.96e-06 3.02e-07 9.09e-07 7.51e-07 1.61e-06 1.18e-06 6.04e-07 7.4e-08 2.17e-07 5.66e-07 5.3e-07 4.12e-07 1.22e-07 1.38e-07 2.18e-07 8.59e-09 4.46e-08 2.88e-06 3.98e-07 2.61e-08 1.78e-07 1.2e-07 1.11e-07 2.16e-09 5.19e-08
ENSG00000117000 RLF -95055 2.73e-05 5.07e-06 7.79e-07 3.1e-06 4.72e-07 1.53e-06 5.01e-06 6.41e-07 3.49e-06 1.98e-06 4.29e-06 1.4e-06 7.06e-06 2.16e-06 1.35e-06 2.48e-06 1.99e-06 3.85e-06 1.61e-06 9.17e-07 1.95e-06 4.73e-06 4.62e-06 1.88e-06 4.78e-06 1.28e-06 2.55e-06 1.55e-06 4.26e-06 3.08e-06 1.96e-06 2.58e-07 6.2e-07 1.59e-06 1.91e-06 9.86e-07 7.36e-07 4.38e-07 1.07e-06 2.27e-07 3.35e-07 7e-06 1.57e-06 1.68e-07 3.38e-07 3.54e-07 5.32e-07 8.74e-08 8.44e-08
ENSG00000117016 \N -599350 5.74e-07 1.19e-07 3.65e-08 2.2e-07 9.91e-08 9.9e-08 1.42e-07 5.21e-08 1.41e-07 4.38e-08 1.6e-07 8.02e-08 1.59e-07 6.21e-08 5.53e-08 8.01e-08 4.94e-08 1.18e-07 5.21e-08 4.21e-08 1.05e-07 1.28e-07 1.26e-07 4.54e-08 1.29e-07 1.13e-07 1.12e-07 8.7e-08 1.03e-07 1.09e-07 9.58e-08 3.59e-08 2.74e-08 8e-08 8.98e-08 4.02e-08 4.63e-08 9.2e-08 7.52e-08 3.05e-08 3.25e-08 1.36e-07 4.1e-08 0.0 9.88e-08 1.7e-08 1.34e-07 4.82e-09 4.74e-08
ENSG00000131238 PPT1 -31395 6.88e-05 1.26e-05 2.54e-06 6.74e-06 2.42e-06 9.14e-06 1.98e-05 2.15e-06 1.05e-05 5.36e-06 1.38e-05 5.61e-06 1.82e-05 3.97e-06 4.33e-06 6.97e-06 6.37e-06 1.22e-05 2.66e-06 2.86e-06 5.97e-06 1.19e-05 1.31e-05 3.4e-06 1.52e-05 4.32e-06 6.69e-06 4.18e-06 1.61e-05 9.92e-06 5.94e-06 4.15e-07 1.29e-06 3.44e-06 4.77e-06 1.73e-06 9.55e-07 1.57e-06 1.26e-06 1.02e-06 9.87e-07 2.31e-05 4.1e-06 1.52e-07 1.02e-06 1.68e-06 2e-06 6.9e-07 5.82e-07
ENSG00000259943 AL050341.2 -191635 6.69e-06 2.12e-06 2.29e-07 1.8e-06 2.1e-07 8.22e-07 1.24e-06 2.07e-07 1.48e-06 4.48e-07 1.84e-06 5.69e-07 2.62e-06 2.96e-07 5.32e-07 7.3e-07 7.88e-07 1.3e-06 6.68e-07 5.13e-07 5.8e-07 1.72e-06 1.17e-06 6.06e-07 1.97e-06 3.02e-07 9.15e-07 7.51e-07 1.61e-06 1.22e-06 6.18e-07 7.4e-08 2.17e-07 5.83e-07 5.3e-07 4.15e-07 1.22e-07 1.38e-07 2.19e-07 8.59e-09 4.51e-08 2.88e-06 3.98e-07 2.61e-08 1.81e-07 1.2e-07 1.11e-07 2.16e-09 4.97e-08