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Genes within 1Mb (chr1:40048997:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 165486 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -268816 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -642651 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -295853 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 356815 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -209239 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 472207 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 357512 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -112390 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -482576 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 967681 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 8764 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -48730 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -459744 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -930691 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -813366 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -401105 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -428293 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -208970 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -643069 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 165486 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -268816 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -642651 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -295853 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 356815 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -209239 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 472207 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 260132 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -112390 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -482576 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 967681 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 8764 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -48730 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -459744 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -930691 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -813366 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -428293 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 277649 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -208970 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -643069 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -642692 eQTL 0.0163 -0.0498 0.0207 0.00171 0.0 0.0486
ENSG00000116981 NT5C1A 376959 pQTL 0.026 0.063 0.0283 0.00102 0.0 0.052
ENSG00000116983 HPCAL4 357512 eQTL 0.0385 -0.0698 0.0337 0.0 0.0 0.0486
ENSG00000117000 RLF -112390 eQTL 6.32e-11 0.171 0.0258 0.0 0.0 0.0486
ENSG00000117013 KCNQ4 -734790 eQTL 4.08e-02 -0.165 0.0803 0.0 0.0 0.0486
ENSG00000131238 PPT1 -48730 eQTL 1.19e-27 0.701 0.0623 0.00182 0.0 0.0486
ENSG00000164002 EXO5 -459744 eQTL 2.11e-02 -0.113 0.0488 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -208970 eQTL 9.78e-06 -0.199 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -209239 3.07e-07 1.35e-07 4.91e-08 2.07e-07 9.01e-08 1e-07 1.6e-07 5.2e-08 1.41e-07 4.4e-08 1.62e-07 7.75e-08 1.41e-07 6.21e-08 5.99e-08 7.17e-08 3.88e-08 1.18e-07 5.97e-08 4.21e-08 1.04e-07 1.27e-07 1.34e-07 3.68e-08 1.32e-07 1.16e-07 1.07e-07 8.71e-08 1.08e-07 1.05e-07 9.7e-08 3.72e-08 3.09e-08 8.21e-08 8.96e-08 3.77e-08 4.91e-08 9.26e-08 6.78e-08 3.12e-08 3.35e-08 1.36e-07 4.7e-08 1.97e-08 4.67e-08 1.67e-08 1.26e-07 4.5e-09 5.04e-08
ENSG00000117000 RLF -112390 1.4e-06 9.23e-07 3.12e-07 9.69e-07 1.11e-07 4.67e-07 1.13e-06 2.03e-07 6.53e-07 2.82e-07 1.15e-06 4.31e-07 1.49e-06 1.57e-07 3.72e-07 3.57e-07 7.47e-07 4.72e-07 4.65e-07 3.72e-07 2.52e-07 6.27e-07 5.66e-07 3.56e-07 1.53e-06 2.64e-07 6.19e-07 2.54e-07 6.84e-07 1.1e-06 4.59e-07 5.08e-08 9.46e-08 1.4e-07 3.29e-07 1.61e-07 9.9e-08 6.67e-08 8.06e-08 5.77e-08 5.39e-08 1.22e-06 3.55e-07 1.68e-07 2.22e-07 1.52e-08 1.03e-07 3.04e-09 6.17e-08
ENSG00000117016 \N -616685 2.56e-07 1.16e-07 3.49e-08 1.66e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.43e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08
ENSG00000131238 PPT1 -48730 9.76e-06 5.13e-06 6.07e-07 2.76e-06 7.94e-07 1.91e-06 4.87e-06 9.96e-07 3.82e-06 1.31e-06 4.46e-06 2.65e-06 7.27e-06 1.33e-06 1.44e-06 2.27e-06 1.87e-06 3.22e-06 1.34e-06 1.01e-06 1.68e-06 4.79e-06 3.51e-06 1.66e-06 4.81e-06 1.24e-06 2.43e-06 1.78e-06 4.42e-06 4.15e-06 2.01e-06 4.34e-07 7.92e-07 1.21e-06 2.08e-06 9.5e-07 7.47e-07 4.18e-07 1.26e-06 3.28e-07 2.14e-07 5.54e-06 1.38e-06 1.58e-07 5.01e-07 3.33e-07 5.64e-07 1.98e-07 3.35e-07
ENSG00000259943 AL050341.2 -208970 3.07e-07 1.35e-07 5.14e-08 2.07e-07 9.01e-08 1e-07 1.6e-07 5.2e-08 1.41e-07 4.4e-08 1.62e-07 7.75e-08 1.45e-07 6.21e-08 5.99e-08 7.17e-08 3.88e-08 1.18e-07 5.97e-08 4.21e-08 1.04e-07 1.27e-07 1.34e-07 3.68e-08 1.32e-07 1.16e-07 1.07e-07 8.71e-08 1.08e-07 1.05e-07 9.7e-08 3.72e-08 3.09e-08 8.21e-08 8.96e-08 3.77e-08 4.91e-08 9.26e-08 6.78e-08 3.12e-08 3.35e-08 1.36e-07 4.7e-08 1.98e-08 4.67e-08 1.67e-08 1.26e-07 4.5e-09 5.04e-08