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Genes within 1Mb (chr1:40007733:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 124222 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -310080 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -683915 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -337117 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 315551 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -250503 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 430943 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 316248 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -153654 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -523840 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 926417 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -32500 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -89994 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -501008 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 981415 sc-eQTL 5.79e-01 -0.101 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -971955 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -854630 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -442369 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -469557 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -250234 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -684333 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 124222 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -310080 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -683915 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -337117 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 315551 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -250503 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 430943 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 218868 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -153654 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -523840 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 926417 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 -32500 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -89994 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -501008 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000168653 NDUFS5 981415 sc-eQTL 9.64e-01 0.00497 0.111 0.063 PB L2
ENSG00000171793 CTPS1 -971955 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -854630 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -469557 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 236385 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -250234 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -684333 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -683956 eQTL 0.0179 -0.0495 0.0209 0.00162 0.0 0.0476
ENSG00000116983 HPCAL4 316248 eQTL 0.0339 -0.0723 0.034 0.0 0.0 0.0476
ENSG00000117000 RLF -153654 eQTL 1.11e-09 0.161 0.0262 0.0 0.0 0.0476
ENSG00000131238 PPT1 -89994 eQTL 4.56e-24 0.661 0.0635 0.0 0.0 0.0476
ENSG00000164002 EXO5 -501008 eQTL 4.96e-02 -0.0971 0.0494 0.0 0.0 0.0476
ENSG00000259943 AL050341.2 -250234 eQTL 6.15e-05 -0.182 0.0452 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -250503 1.29e-06 9.37e-07 8.83e-08 4.37e-07 1.1e-07 4.63e-07 6.06e-07 7.98e-08 7.15e-07 2.81e-07 9.39e-07 3.21e-07 1.55e-06 2.59e-07 4.26e-07 2.55e-07 1.35e-07 4.72e-07 3.06e-07 9.17e-08 1.8e-07 5.17e-07 4.66e-07 1.34e-07 1.49e-06 2.33e-07 3.04e-07 1.95e-07 2.84e-07 4.61e-07 3.79e-07 8.25e-08 3.21e-08 1.57e-07 3.44e-07 3.36e-08 1.07e-07 7.61e-08 5.89e-08 5.8e-08 6e-08 7.22e-07 3.19e-08 1.91e-07 1.01e-07 1.46e-08 9.26e-08 2.2e-09 4.68e-08
ENSG00000117000 RLF -153654 2.61e-06 2.59e-06 3.05e-07 1.76e-06 3.57e-07 7.85e-07 1.46e-06 3.46e-07 1.8e-06 7.11e-07 2.05e-06 8.37e-07 3.64e-06 1.24e-06 3.68e-07 9.85e-07 8.25e-07 1.36e-06 5.78e-07 6.61e-07 5.66e-07 1.97e-06 1.42e-06 5.66e-07 2.57e-06 4.27e-07 9.45e-07 6.83e-07 1.31e-06 1.21e-06 8.83e-07 1.55e-07 5.82e-08 6.64e-07 5.82e-07 2.13e-07 5.12e-07 1.16e-07 1.73e-07 3.01e-07 1.23e-07 2.46e-06 5.07e-08 1.9e-07 1.81e-07 1.98e-07 1.9e-07 4.41e-08 4.96e-08
ENSG00000117016 \N -657949 2.66e-07 1.06e-07 3.39e-08 1.79e-07 9.02e-08 9.71e-08 1.39e-07 5.21e-08 1.37e-07 4.24e-08 1.63e-07 7.6e-08 1.26e-07 6.21e-08 5.4e-08 8.01e-08 5.12e-08 1.1e-07 5.19e-08 3.29e-08 1.03e-07 1.33e-07 1.29e-07 4.98e-08 1.29e-07 1.09e-07 1.1e-07 8.45e-08 1.03e-07 1.09e-07 9.75e-08 3.95e-08 2.75e-08 8.02e-08 9.02e-08 4.19e-08 4.91e-08 8.78e-08 8.22e-08 3.59e-08 3.89e-08 1.37e-07 4.23e-08 2.04e-08 8.16e-08 1.74e-08 1.37e-07 4.7e-09 4.61e-08
ENSG00000131238 PPT1 -89994 7.03e-06 5.68e-06 3.33e-07 3.21e-06 6.09e-07 1.53e-06 3.15e-06 7.33e-07 4.92e-06 1.97e-06 4.22e-06 2.65e-06 7.66e-06 2.45e-06 1.45e-06 2e-06 1.64e-06 3.71e-06 1.45e-06 1.13e-06 1.19e-06 4.13e-06 3.51e-06 1.32e-06 7.72e-06 1.07e-06 1.63e-06 1.44e-06 3.74e-06 3.81e-06 1.93e-06 2.78e-07 3.79e-07 1.26e-06 1.92e-06 5.3e-07 7.5e-07 3.43e-07 7.65e-07 4.17e-07 3.35e-07 5.64e-06 5.27e-07 1.62e-07 3.3e-07 3.72e-07 6.08e-07 6.02e-08 2.74e-07
ENSG00000259943 AL050341.2 -250234 1.29e-06 9.36e-07 8.83e-08 4.37e-07 1.1e-07 4.63e-07 6.06e-07 7.98e-08 7.15e-07 2.81e-07 9.39e-07 3.21e-07 1.55e-06 2.59e-07 4.26e-07 2.55e-07 1.35e-07 4.72e-07 3.06e-07 9.17e-08 1.8e-07 5.17e-07 4.66e-07 1.34e-07 1.49e-06 2.33e-07 3.04e-07 1.95e-07 2.84e-07 4.72e-07 3.81e-07 8.25e-08 3.21e-08 1.57e-07 3.44e-07 3.36e-08 1.07e-07 7.61e-08 5.89e-08 5.8e-08 6.07e-08 7.22e-07 3.19e-08 1.91e-07 1.01e-07 1.48e-08 9.26e-08 2.2e-09 4.68e-08
ENSG00000261798 \N 218757 1.26e-06 9.47e-07 1.12e-07 1.04e-06 9.9e-08 6.38e-07 7.44e-07 1.38e-07 1.13e-06 3.11e-07 1.15e-06 4.94e-07 2.1e-06 2.81e-07 4.55e-07 4.14e-07 3.63e-07 5.63e-07 4.24e-07 1.71e-07 2.35e-07 7.21e-07 7.08e-07 2.68e-07 1.95e-06 2.74e-07 4.83e-07 2.63e-07 4.76e-07 7.71e-07 4.71e-07 6.56e-08 4.74e-08 2.12e-07 3.4e-07 5.14e-08 1.83e-07 5.71e-08 5.67e-08 2.15e-08 4.73e-08 1.3e-06 2.47e-08 2.07e-07 1.48e-07 4.53e-08 8.01e-08 0.0 5.58e-08