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Genes within 1Mb (chr1:40005821:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 122310 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -311992 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -685827 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -339029 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 313639 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -252415 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 429031 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 314336 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -155566 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -525752 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 924505 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -34412 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -91906 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -502920 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 979503 sc-eQTL 5.79e-01 -0.101 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -973867 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -856542 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -444281 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -471469 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -252146 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -686245 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 122310 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -311992 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -685827 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -339029 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 313639 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -252415 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 429031 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 216956 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -155566 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -525752 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 924505 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 -34412 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -91906 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -502920 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000168653 NDUFS5 979503 sc-eQTL 9.64e-01 0.00497 0.111 0.063 PB L2
ENSG00000171793 CTPS1 -973867 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -856542 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -471469 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 234473 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -252146 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -686245 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -685868 eQTL 0.0179 -0.0495 0.0209 0.00162 0.0 0.0476
ENSG00000116983 HPCAL4 314336 eQTL 0.0339 -0.0723 0.034 0.0 0.0 0.0476
ENSG00000117000 RLF -155566 eQTL 1.12e-09 0.161 0.0262 0.0 0.0 0.0476
ENSG00000131238 PPT1 -91906 eQTL 4.66e-24 0.66 0.0635 0.0 0.0 0.0476
ENSG00000164002 EXO5 -502920 eQTL 4.98e-02 -0.097 0.0494 0.0 0.0 0.0476
ENSG00000259943 AL050341.2 -252146 eQTL 6.19e-05 -0.182 0.0452 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -252415 2.13e-06 2.46e-06 2.92e-07 1.25e-06 3.69e-07 6.96e-07 1.24e-06 3.62e-07 1.67e-06 6.61e-07 1.99e-06 1.13e-06 2.57e-06 4.13e-07 4.14e-07 9.7e-07 1.12e-06 9.7e-07 5.36e-07 4.92e-07 7.79e-07 1.95e-06 1.46e-06 6.47e-07 2.44e-06 7.53e-07 1.06e-06 9.24e-07 1.67e-06 1.62e-06 8e-07 1.87e-07 2.85e-07 5.85e-07 5.82e-07 4.46e-07 7.58e-07 2.94e-07 4.52e-07 2.98e-07 2.45e-07 2.12e-06 3.53e-07 5.72e-08 1.86e-07 2.3e-07 2.43e-07 1.4e-07 8.61e-08
ENSG00000117000 RLF -155566 4.58e-06 4.99e-06 5.62e-07 2.24e-06 8.02e-07 1.39e-06 3.23e-06 6.41e-07 2.51e-06 1.67e-06 4.22e-06 2.74e-06 6.61e-06 1.62e-06 1.18e-06 2e-06 1.83e-06 2.09e-06 1.35e-06 8.79e-07 1.56e-06 4.13e-06 3.42e-06 1.6e-06 5.08e-06 1.23e-06 2.1e-06 1.72e-06 4.13e-06 4.14e-06 1.97e-06 3.41e-07 5.69e-07 1.75e-06 1.74e-06 9.87e-07 9.08e-07 4.24e-07 1.17e-06 3.64e-07 3.59e-07 4.93e-06 5.27e-07 1.99e-07 3.62e-07 3.52e-07 8.85e-07 2.62e-07 3.01e-07
ENSG00000117016 \N -659861 3.71e-07 1.76e-07 6.04e-08 2.24e-07 1.03e-07 1.03e-07 2.4e-07 5.75e-08 1.44e-07 7.6e-08 1.66e-07 1.31e-07 2.05e-07 8e-08 5.97e-08 7.98e-08 4.18e-08 1.56e-07 7.36e-08 6.03e-08 1.22e-07 1.56e-07 1.64e-07 3.58e-08 2.09e-07 1.31e-07 1.22e-07 1.04e-07 1.32e-07 1.46e-07 1.08e-07 3.03e-08 3.38e-08 9.52e-08 4.41e-08 2.68e-08 4.07e-08 8.17e-08 6.76e-08 4.41e-08 4.94e-08 1.55e-07 3.08e-08 7.21e-09 4.25e-08 6.39e-09 8.74e-08 0.0 4.8e-08
ENSG00000131238 PPT1 -91906 7.83e-06 9.35e-06 6.55e-07 3.84e-06 1.73e-06 3.09e-06 9.3e-06 9.78e-07 4.54e-06 3.1e-06 8.95e-06 3.3e-06 1.1e-05 3.14e-06 1.17e-06 4.07e-06 3.53e-06 3.93e-06 1.81e-06 1.71e-06 2.82e-06 7.4e-06 5.58e-06 1.99e-06 1.05e-05 2.12e-06 3.39e-06 1.73e-06 6.94e-06 7.84e-06 3.09e-06 4.2e-07 4.63e-07 2.53e-06 2.1e-06 1.15e-06 1.02e-06 4.36e-07 8.6e-07 5.75e-07 2.78e-07 8.42e-06 6.81e-07 1.68e-07 4.86e-07 1.06e-06 1.15e-06 7.05e-07 3.38e-07
ENSG00000259943 AL050341.2 -252146 2.13e-06 2.46e-06 2.92e-07 1.25e-06 3.82e-07 7.28e-07 1.24e-06 3.62e-07 1.66e-06 6.61e-07 1.97e-06 1.13e-06 2.57e-06 4.13e-07 4.14e-07 9.7e-07 1.12e-06 9.65e-07 5.36e-07 4.92e-07 7.79e-07 1.95e-06 1.47e-06 5.89e-07 2.39e-06 7.46e-07 1.06e-06 9.24e-07 1.67e-06 1.62e-06 8e-07 1.87e-07 2.85e-07 5.85e-07 6.12e-07 4.46e-07 7.58e-07 2.94e-07 4.52e-07 2.98e-07 2.45e-07 2.12e-06 3.53e-07 6.46e-08 1.86e-07 2.32e-07 2.43e-07 1.4e-07 8.61e-08
ENSG00000261798 \N 216845 3.24e-06 3.13e-06 2.8e-07 1.69e-06 4.87e-07 7.7e-07 1.65e-06 4.18e-07 1.78e-06 7.58e-07 2.11e-06 1.45e-06 3.35e-06 1.02e-06 5.05e-07 1.15e-06 1.04e-06 1.34e-06 6.91e-07 9.52e-07 6.35e-07 2.67e-06 2.11e-06 9.49e-07 3.39e-06 1.05e-06 1.19e-06 1.04e-06 1.86e-06 1.89e-06 7.53e-07 2.96e-07 3.47e-07 1.1e-06 9e-07 5.06e-07 7.55e-07 3.36e-07 4.69e-07 2.26e-07 2.73e-07 2.99e-06 4.14e-07 1.06e-07 2.5e-07 2.82e-07 3.69e-07 2.44e-07 1.58e-07