Genes within 1Mb (chr1:39933056:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 49545 eQTL 1.20e-05 0.0858 0.0195 0.00111 0.0 0.427
ENSG00000084070 SMAP2 -411794 eQTL 9.04e-03 -0.0274 0.0105 0.0 0.0011 0.427
ENSG00000084072 PPIE 240874 pQTL 9.52e-03 -0.0854 0.0329 0.0023 0.0 0.423
ENSG00000084072 PPIE 240874 eQTL 5.38e-06 0.113 0.0247 0.0 0.0 0.427
ENSG00000116990 MYCL 30800 eQTL 4.99e-02 -0.033 0.0168 0.0 0.0 0.427
ENSG00000168389 MFSD2A -22056 eQTL 2.21e-05 -0.0751 0.0176 0.019 0.017 0.427
ENSG00000213172 AL031985.1 -431710 eQTL 2.80e-02 -0.0615 0.0279 0.0 0.0 0.427
ENSG00000228477 AL663070.1 -29624 eQTL 1.85e-02 -0.0616 0.0261 0.00173 0.0 0.427
ENSG00000238287 AL603839.3 -575605 eQTL 4.34e-03 0.123 0.043 0.0 0.0 0.427
ENSG00000259943 AL050341.2 -324911 eQTL 6.74e-03 0.0545 0.0201 0.0 0.0 0.427


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 49545 9.93e-06 9.99e-06 1.24e-06 5.05e-06 2.35e-06 4.1e-06 1.07e-05 1.79e-06 7.72e-06 5.11e-06 1.23e-05 5.28e-06 1.34e-05 3.84e-06 2.52e-06 6.37e-06 4.74e-06 7.04e-06 2.65e-06 2.81e-06 5.06e-06 8.98e-06 7.98e-06 3.29e-06 1.42e-05 3.24e-06 4.87e-06 3.39e-06 9.77e-06 8.01e-06 5.06e-06 6.75e-07 1.09e-06 2.98e-06 4.14e-06 2.14e-06 1.4e-06 1.86e-06 1.57e-06 9.52e-07 7.88e-07 1.28e-05 1.38e-06 1.83e-07 7.16e-07 1.68e-06 1.56e-06 7.55e-07 5.09e-07
ENSG00000084072 PPIE 240874 1.23e-06 9.28e-07 2.95e-07 5.88e-07 2.66e-07 4.39e-07 1.33e-06 3.31e-07 1.13e-06 4.28e-07 1.39e-06 6.2e-07 1.63e-06 2.83e-07 4.19e-07 7.13e-07 7.91e-07 5.54e-07 5.54e-07 6.11e-07 3.8e-07 1.17e-06 9.21e-07 6.25e-07 2.24e-06 3.02e-07 7.73e-07 5.63e-07 1.07e-06 1.13e-06 5.26e-07 4.5e-08 1.73e-07 5.28e-07 5.41e-07 3.59e-07 3.14e-07 1.58e-07 1.6e-07 1.04e-07 1.46e-07 1.49e-06 5e-08 1.93e-08 1.61e-07 1.3e-07 2.34e-07 8.48e-08 8.28e-08
ENSG00000168389 MFSD2A -22056 1.65e-05 1.8e-05 2.97e-06 1.02e-05 2.97e-06 6.77e-06 2.34e-05 3.02e-06 1.6e-05 8.35e-06 2.18e-05 8.6e-06 2.89e-05 7.35e-06 5.14e-06 9.88e-06 1e-05 1.52e-05 4.28e-06 4.17e-06 8.43e-06 1.68e-05 1.8e-05 5.19e-06 2.77e-05 5.34e-06 7.94e-06 7.33e-06 1.8e-05 1.65e-05 1.11e-05 9.89e-07 1.56e-06 4.4e-06 6.9e-06 3.76e-06 1.77e-06 2.49e-06 2.91e-06 1.92e-06 1.2e-06 2.33e-05 2.6e-06 1.75e-07 1.58e-06 2.56e-06 3.24e-06 1.02e-06 7.53e-07
ENSG00000213172 AL031985.1 -431710 5.37e-07 2.67e-07 7e-08 2.49e-07 1.09e-07 1.08e-07 3.33e-07 7.52e-08 1.94e-07 1.39e-07 2.47e-07 2.09e-07 2.94e-07 8.26e-08 9.12e-08 1.13e-07 6.81e-08 2.33e-07 8.93e-08 8.69e-08 1.34e-07 2.09e-07 2.2e-07 6.65e-08 4.27e-07 1.56e-07 1.57e-07 1.48e-07 1.54e-07 1.81e-07 1.43e-07 4.58e-08 4.34e-08 9.81e-08 1.27e-07 4.86e-08 5.96e-08 7.25e-08 6.45e-08 7.53e-08 6.21e-08 2.72e-07 3.31e-08 7.37e-09 4.91e-08 9.12e-09 8.94e-08 3.09e-09 4.82e-08
ENSG00000228477 AL663070.1 -29624 1.42e-05 1.48e-05 2.57e-06 8.36e-06 2.36e-06 5.83e-06 1.96e-05 2.27e-06 1.25e-05 6.76e-06 1.85e-05 7.34e-06 2.36e-05 5.28e-06 4.38e-06 8.83e-06 8.14e-06 1.18e-05 3.42e-06 3.29e-06 7.03e-06 1.32e-05 1.42e-05 4.56e-06 2.42e-05 4.58e-06 7.53e-06 5.43e-06 1.53e-05 1.36e-05 8.75e-06 9.89e-07 1.31e-06 3.85e-06 5.89e-06 2.85e-06 1.79e-06 2.12e-06 2.18e-06 1.27e-06 9.34e-07 1.89e-05 2.43e-06 1.6e-07 1.05e-06 2.28e-06 2.5e-06 7.24e-07 4.79e-07
ENSG00000237624 \N 418100 5.85e-07 3.12e-07 6.57e-08 2.44e-07 1.05e-07 1.25e-07 3.57e-07 8.11e-08 1.96e-07 1.5e-07 2.84e-07 2.28e-07 3.18e-07 8.85e-08 1.07e-07 1.17e-07 8.64e-08 2.56e-07 9.71e-08 8.1e-08 1.35e-07 2.15e-07 2.33e-07 7.94e-08 4.67e-07 1.71e-07 1.74e-07 1.54e-07 1.6e-07 2.02e-07 1.59e-07 5.24e-08 4.97e-08 1.01e-07 1.39e-07 5.14e-08 5.54e-08 7.1e-08 5.95e-08 7.67e-08 5.04e-08 2.9e-07 3.19e-08 1.53e-08 5.4e-08 1.3e-08 9.19e-08 3.3e-09 5.49e-08
ENSG00000259943 AL050341.2 -324911 1.11e-06 6.97e-07 1.04e-07 3.99e-07 1.07e-07 2.16e-07 6.18e-07 1.59e-07 4.26e-07 2.87e-07 8.15e-07 4.94e-07 7.53e-07 1.59e-07 2.86e-07 2.83e-07 3.75e-07 3.74e-07 2.56e-07 1.71e-07 2.01e-07 4.14e-07 4.01e-07 2.39e-07 1.28e-06 2.34e-07 3.93e-07 2.63e-07 4.15e-07 6.35e-07 3.13e-07 7.5e-08 4.28e-08 1.54e-07 3.5e-07 1.18e-07 1.08e-07 7.53e-08 4.17e-08 2.26e-08 4.36e-08 7.52e-07 5.44e-08 1.99e-08 1.29e-07 3.87e-08 1.32e-07 4.41e-08 6.06e-08