Genes within 1Mb (chr1:39917880:G:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 34369 eQTL 2.48e-18 0.168 0.0188 0.0 0.0 0.483
ENSG00000084072 PPIE 225698 pQTL 3.64e-02 -0.0688 0.0328 0.0012 0.0 0.478
ENSG00000084072 PPIE 225698 eQTL 8.94e-08 0.132 0.0245 0.0 0.0 0.483
ENSG00000116985 BMP8B 129015 eQTL 3.36e-02 -0.062 0.0291 0.0 0.0 0.483
ENSG00000116990 MYCL 15624 eQTL 1.17e-04 -0.0644 0.0167 0.014 0.0204 0.483
ENSG00000168389 MFSD2A -37232 eQTL 5.46e-04 -0.061 0.0176 0.00129 0.00104 0.483
ENSG00000187801 ZFP69B -532227 eQTL 4.32e-02 0.0555 0.0274 0.0 0.0 0.483
ENSG00000198754 OXCT2 146532 eQTL 2.69e-02 -0.0723 0.0326 0.0 0.0 0.483
ENSG00000228477 AL663070.1 -44800 eQTL 1.21e-02 -0.0653 0.026 0.00214 0.0 0.483
ENSG00000260920 AL031985.3 -546439 eQTL 7.68e-03 0.0662 0.0248 0.00236 0.0 0.483
ENSG00000284719 AL033527.5 118458 eQTL 3.77e-02 0.084 0.0404 0.0 0.0 0.483


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 34369 4.42e-05 1.24e-05 1.3e-06 5.17e-06 1.85e-06 5.83e-06 1.16e-05 1.34e-06 7.75e-06 4.89e-06 1.15e-05 4.35e-06 1.62e-05 3.84e-06 2.98e-06 6.33e-06 4.12e-06 9.58e-06 2.56e-06 1.98e-06 4.6e-06 1e-05 7.99e-06 2.6e-06 1.52e-05 3.09e-06 5.16e-06 2.73e-06 9.57e-06 8.22e-06 5.07e-06 4.31e-07 7.87e-07 2.67e-06 3.5e-06 1.17e-06 9.54e-07 4.39e-07 1.56e-06 9.55e-07 3.75e-07 1.57e-05 2.06e-06 1.6e-07 6.87e-07 1.05e-06 9.45e-07 5.67e-07 6.17e-07
ENSG00000084072 PPIE 225698 4.19e-06 1.84e-06 2.48e-07 1.27e-06 1.78e-07 6.06e-07 1.47e-06 2.21e-07 1.15e-06 3.82e-07 1.79e-06 5.73e-07 2.23e-06 2.77e-07 5.5e-07 8.48e-07 8.06e-07 9.65e-07 5.7e-07 5.33e-07 3.07e-07 1.6e-06 9.21e-07 5.01e-07 2.16e-06 2.99e-07 9.29e-07 5.44e-07 1.01e-06 1.29e-06 5.88e-07 3.31e-08 1.31e-07 7.03e-07 5.61e-07 2.58e-07 1.83e-07 8.04e-08 1.38e-07 9.44e-09 8.35e-08 2.2e-06 5.95e-07 3.36e-08 1.8e-07 1.11e-07 1.27e-07 1.13e-08 5.96e-08
ENSG00000116985 BMP8B 129015 1.02e-05 4.77e-06 4.5e-07 2.02e-06 4.65e-07 9.7e-07 2.47e-06 3.77e-07 1.86e-06 8.05e-07 2.78e-06 1.45e-06 4.9e-06 1.22e-06 9.36e-07 1.77e-06 1.56e-06 2.37e-06 7.68e-07 7.64e-07 7.87e-07 3.35e-06 2.51e-06 9.74e-07 4.54e-06 1.21e-06 1.63e-06 1.26e-06 1.98e-06 2.52e-06 1.89e-06 2.95e-07 3.44e-07 1.26e-06 1.35e-06 5.31e-07 7.25e-07 2.29e-07 7.31e-07 2.26e-07 2.89e-07 5.54e-06 4.73e-07 1.38e-07 3.65e-07 3.06e-07 2.26e-07 8.25e-08 1.16e-07
ENSG00000116990 MYCL 15624 5.6e-05 1.68e-05 2.3e-06 8.36e-06 2.35e-06 9.68e-06 2.08e-05 2.12e-06 1.25e-05 6.76e-06 1.69e-05 6.14e-06 2.66e-05 4.75e-06 4.78e-06 9.28e-06 7.55e-06 1.52e-05 3.52e-06 2.84e-06 6.87e-06 1.41e-05 1.52e-05 3.81e-06 2.46e-05 4.65e-06 7.54e-06 5.2e-06 1.49e-05 1.38e-05 8.68e-06 9.74e-07 1.17e-06 3.55e-06 5.42e-06 2.56e-06 1.57e-06 1.84e-06 2.01e-06 1.26e-06 8.4e-07 2.26e-05 2.72e-06 1.61e-07 1.05e-06 1.74e-06 1.8e-06 7.42e-07 4.66e-07
ENSG00000131238 \N -179847 5.72e-06 2.53e-06 2.93e-07 1.49e-06 3.17e-07 7.16e-07 1.25e-06 3.46e-07 1.68e-06 6.29e-07 1.97e-06 7.53e-07 2.69e-06 8.9e-07 3.84e-07 9.77e-07 1.04e-06 1.59e-06 7.14e-07 6.52e-07 7.72e-07 1.92e-06 1.19e-06 5.77e-07 2.55e-06 6.42e-07 1.12e-06 8.04e-07 1.63e-06 1.36e-06 8.13e-07 7.32e-08 1.87e-07 5.4e-07 6.46e-07 4.32e-07 3.62e-07 1.14e-07 4.67e-07 2.46e-07 1.38e-07 3.31e-06 4.11e-07 6.48e-08 1.52e-07 1.98e-07 1.91e-07 3.79e-08 5.18e-08
ENSG00000168389 MFSD2A -37232 4.21e-05 1.22e-05 1.32e-06 5.14e-06 1.71e-06 5.69e-06 1.09e-05 1.28e-06 6.96e-06 4.73e-06 1.06e-05 3.71e-06 1.53e-05 3.86e-06 2.66e-06 6.47e-06 4.01e-06 8.79e-06 2.3e-06 1.69e-06 4.57e-06 9.54e-06 7.49e-06 2.21e-06 1.39e-05 2.85e-06 4.67e-06 2.43e-06 8.87e-06 7.97e-06 4.75e-06 4.34e-07 7.66e-07 2.78e-06 3.16e-06 1.17e-06 9.16e-07 4.58e-07 1.38e-06 8.66e-07 2.78e-07 1.51e-05 1.8e-06 1.93e-07 7.34e-07 1.08e-06 1.04e-06 4.59e-07 5.13e-07
ENSG00000228477 AL663070.1 -44800 3.75e-05 1.12e-05 8.44e-07 4.32e-06 1.75e-06 5.06e-06 1.01e-05 1.18e-06 5.68e-06 4.1e-06 9.93e-06 2.93e-06 1.32e-05 3.9e-06 2.19e-06 6.1e-06 3.8e-06 7.77e-06 1.92e-06 1.41e-06 3.37e-06 8.14e-06 6.87e-06 2.02e-06 1.28e-05 2.41e-06 4.63e-06 1.76e-06 7.52e-06 7.77e-06 4.16e-06 5.58e-07 4.63e-07 2.24e-06 2.56e-06 9.03e-07 1e-06 5.28e-07 1.42e-06 7.19e-07 2.4e-07 1.34e-05 1.64e-06 1.89e-07 7.17e-07 1.22e-06 1.13e-06 2.87e-07 3.29e-07