Genes within 1Mb (chr1:39888429:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 4918 eQTL 1.20e-03 0.112 0.0345 0.0 0.0 0.0844
ENSG00000084070 SMAP2 -456421 eQTL 4.37e-02 0.0373 0.0185 0.0 0.0 0.0844
ENSG00000084072 PPIE 196247 eQTL 4.26e-02 -0.0889 0.0438 0.00116 0.0 0.0844
ENSG00000116985 BMP8B 99564 eQTL 2.26e-11 -0.341 0.0504 0.0 0.0 0.0844
ENSG00000131238 PPT1 -209298 pQTL 8.58e-03 0.155 0.0588 0.00226 0.0 0.0831
ENSG00000164002 EXO5 -620312 eQTL 5.21e-03 -0.107 0.0383 0.0 0.0 0.0844
ENSG00000179862 CITED4 -973937 eQTL 2.13e-02 -0.112 0.0486 0.0 0.0 0.0844
ENSG00000198754 OXCT2 117081 eQTL 3.80e-15 -0.448 0.056 0.0 0.0 0.0844
ENSG00000237624 OXCT2P1 373473 eQTL 2.74e-08 0.4 0.0714 0.0 0.0 0.0844
ENSG00000238287 AL603839.3 -620232 eQTL 1.66e-02 0.182 0.0758 0.0 0.0 0.0844
ENSG00000261798 AL033527.3 99453 eQTL 5.56e-10 -0.378 0.0602 0.0 0.0 0.0844
ENSG00000272145 NFYC-AS1 -803637 eQTL 1.66e-02 0.148 0.0616 0.00147 0.0 0.0844
ENSG00000284719 AL033527.5 89007 eQTL 6.66e-53 -1.03 0.0632 0.0 0.0 0.0844


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 4918 4.47e-05 3.82e-05 7.63e-06 1.87e-05 8.03e-06 1.86e-05 5.58e-05 6.99e-06 4.5e-05 2.21e-05 5.66e-05 2.43e-05 6.26e-05 1.83e-05 9.33e-06 2.82e-05 2.43e-05 3.38e-05 1.04e-05 9.03e-06 2.29e-05 4.59e-05 3.93e-05 1.22e-05 6.01e-05 1.28e-05 1.99e-05 1.82e-05 4.02e-05 3.48e-05 2.98e-05 2.68e-06 4.99e-06 8.63e-06 1.59e-05 7.92e-06 4.49e-06 4.48e-06 6.88e-06 4.15e-06 1.9e-06 4.6e-05 4.94e-06 5.27e-07 3.31e-06 5.27e-06 5.63e-06 2.65e-06 1.86e-06
ENSG00000116985 BMP8B 99564 7.88e-06 9.5e-06 1.32e-06 4.37e-06 2.25e-06 3.09e-06 1.04e-05 1.79e-06 9.16e-06 4.47e-06 1.13e-05 5.31e-06 1.16e-05 4.03e-06 1.79e-06 6.45e-06 3.75e-06 6.22e-06 2.69e-06 2.27e-06 4.52e-06 7.6e-06 7.17e-06 2.76e-06 1.36e-05 3.11e-06 4.93e-06 3.16e-06 7.44e-06 7.69e-06 5.06e-06 1.07e-06 8.3e-07 2.75e-06 3.56e-06 2.12e-06 1.19e-06 1.09e-06 1.57e-06 8.18e-07 8.99e-07 1.13e-05 1.42e-06 4.21e-07 8.13e-07 8.07e-07 9.16e-07 6.9e-07 4.37e-07
ENSG00000117016 \N -777253 2.69e-07 1.25e-07 3.69e-08 1.81e-07 8.83e-08 9.65e-08 1.53e-07 5.2e-08 1.44e-07 4.74e-08 1.57e-07 8.68e-08 1.41e-07 6.56e-08 6.02e-08 7.37e-08 4.48e-08 1.26e-07 6.32e-08 4.04e-08 1.19e-07 1.27e-07 1.39e-07 3.42e-08 1.4e-07 1.25e-07 1.07e-07 9.57e-08 1.05e-07 1.12e-07 9.64e-08 3.96e-08 3.73e-08 8.34e-08 8.21e-08 3.93e-08 5.65e-08 9.26e-08 6.63e-08 3.71e-08 4.94e-08 1.33e-07 5.21e-08 9e-08 3.81e-08 1.83e-08 1.24e-07 1.88e-09 4.8e-08
ENSG00000198754 OXCT2 117081 6.3e-06 8.42e-06 6.49e-07 3.87e-06 1.83e-06 1.73e-06 9.55e-06 1.44e-06 6.4e-06 3.58e-06 9.14e-06 4.6e-06 1.05e-05 3.18e-06 9.88e-07 5.24e-06 2.75e-06 3.89e-06 2.2e-06 1.63e-06 3.37e-06 6.99e-06 5.82e-06 1.99e-06 1.18e-05 2.4e-06 4.46e-06 2.36e-06 6.2e-06 5.88e-06 4.07e-06 8.39e-07 8.05e-07 2.34e-06 2.42e-06 1.7e-06 1.08e-06 5.46e-07 1.41e-06 6.03e-07 7.59e-07 8.17e-06 1.16e-06 3.78e-07 7.18e-07 1.14e-06 1.1e-06 6.66e-07 5.79e-07
ENSG00000237624 OXCT2P1 373473 1.31e-06 8.9e-07 1.45e-07 4.72e-07 1.09e-07 3.36e-07 9.92e-07 2.28e-07 1.08e-06 2.98e-07 1.24e-06 5.7e-07 1.2e-06 2.05e-07 4.12e-07 4.53e-07 3.75e-07 5.27e-07 5.07e-07 3.57e-07 3.35e-07 5.76e-07 6.1e-07 3.53e-07 1.74e-06 2.89e-07 5.76e-07 4.71e-07 5.78e-07 7.6e-07 4.54e-07 4.1e-08 1.79e-07 3.28e-07 3.18e-07 2.54e-07 4e-07 1.42e-07 1.44e-07 1.87e-08 2.86e-07 9.58e-07 5.66e-08 1.5e-07 1.75e-07 3.87e-08 1.08e-07 8.35e-08 1.07e-07
ENSG00000261798 AL033527.3 99453 7.88e-06 9.5e-06 1.32e-06 4.31e-06 2.25e-06 3.11e-06 1.04e-05 1.81e-06 9.16e-06 4.46e-06 1.15e-05 5.31e-06 1.15e-05 4.03e-06 1.79e-06 6.45e-06 3.75e-06 6.22e-06 2.69e-06 2.27e-06 4.52e-06 7.6e-06 7.17e-06 2.76e-06 1.36e-05 3.04e-06 4.93e-06 3.19e-06 7.44e-06 7.69e-06 5.06e-06 1.07e-06 8.3e-07 2.75e-06 3.56e-06 2.12e-06 1.21e-06 1.09e-06 1.57e-06 8.46e-07 8.99e-07 1.13e-05 1.4e-06 4.21e-07 8.13e-07 8.07e-07 9.16e-07 6.9e-07 4.37e-07
ENSG00000272145 NFYC-AS1 -803637 2.67e-07 1.19e-07 3.72e-08 1.86e-07 8.83e-08 9.61e-08 1.49e-07 5.19e-08 1.44e-07 4.57e-08 1.62e-07 8.55e-08 1.33e-07 6.56e-08 6.17e-08 7.17e-08 4.63e-08 1.21e-07 6.07e-08 4.45e-08 1.13e-07 1.27e-07 1.34e-07 3.79e-08 1.37e-07 1.21e-07 1.06e-07 9.36e-08 1.05e-07 1.12e-07 9.64e-08 4.22e-08 3.96e-08 8.55e-08 8.76e-08 3.93e-08 5.3e-08 9.23e-08 6.55e-08 4.02e-08 5.13e-08 1.31e-07 5.2e-08 8.06e-08 3.42e-08 1.83e-08 1.23e-07 3.78e-09 5e-08
ENSG00000284719 AL033527.5 89007 9e-06 9.82e-06 1.29e-06 5e-06 2.36e-06 4.02e-06 1.15e-05 2.16e-06 1e-05 5.11e-06 1.24e-05 5.85e-06 1.34e-05 3.78e-06 2.18e-06 6.33e-06 3.85e-06 7.6e-06 2.64e-06 2.66e-06 5.12e-06 8.39e-06 8.1e-06 3.17e-06 1.65e-05 3.75e-06 6.12e-06 3.69e-06 8.7e-06 7.86e-06 5.88e-06 9.98e-07 1.09e-06 2.91e-06 4.14e-06 2.3e-06 1.4e-06 1.66e-06 1.76e-06 9.55e-07 1.02e-06 1.25e-05 1.38e-06 4.33e-07 8.64e-07 1.2e-06 1.06e-06 7.48e-07 4.62e-07