Genes within 1Mb (chr1:39844549:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -38962 eQTL 3.28e-04 0.121 0.0337 0.0 0.0 0.0864
ENSG00000084070 SMAP2 -500301 eQTL 4.46e-02 0.0363 0.0181 0.0 0.0 0.0864
ENSG00000084072 PPIE 152367 eQTL 5.65e-02 -0.0819 0.0429 0.00101 0.0 0.0864
ENSG00000116985 BMP8B 55684 eQTL 1.37e-11 -0.338 0.0493 0.0 0.0 0.0864
ENSG00000131238 PPT1 -253178 pQTL 5.80e-03 0.159 0.0577 0.00282 0.00113 0.0842
ENSG00000164002 EXO5 -664192 eQTL 6.13e-03 -0.103 0.0375 0.0 0.0 0.0864
ENSG00000198754 OXCT2 73201 eQTL 4.48e-15 -0.437 0.0548 0.0 0.0 0.0864
ENSG00000237624 OXCT2P1 329593 eQTL 8.31e-08 0.378 0.07 0.0 0.0 0.0864
ENSG00000238287 AL603839.3 -664112 eQTL 1.50e-02 0.181 0.0742 0.0 0.0 0.0864
ENSG00000261798 AL033527.3 55573 eQTL 3.38e-10 -0.374 0.0589 0.0 0.0 0.0864
ENSG00000272145 NFYC-AS1 -847517 eQTL 2.15e-02 0.139 0.0603 0.00127 0.0 0.0864
ENSG00000284719 AL033527.5 45127 eQTL 1.10e-53 -1.02 0.0617 0.0 0.0 0.0864


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -38962 1.77e-05 2.79e-05 3.46e-06 1.33e-05 2.96e-06 7.88e-06 2.53e-05 3.39e-06 1.9e-05 8.72e-06 2.48e-05 8.69e-06 3.63e-05 8.78e-06 4.83e-06 1.05e-05 1.01e-05 1.58e-05 5.37e-06 4.23e-06 7.92e-06 1.97e-05 1.95e-05 4.85e-06 3.56e-05 5.37e-06 8.26e-06 7.23e-06 2.01e-05 1.69e-05 1.29e-05 1.2e-06 1.43e-06 4.69e-06 8.76e-06 3.76e-06 1.68e-06 2.43e-06 3.25e-06 1.97e-06 9.34e-07 2.92e-05 2.48e-06 3.62e-07 1.05e-06 2.49e-06 2.62e-06 7.33e-07 7.09e-07
ENSG00000116985 BMP8B 55684 1.41e-05 2.26e-05 2.59e-06 1.21e-05 2.36e-06 6.21e-06 2.01e-05 2.48e-06 1.6e-05 6.62e-06 1.99e-05 6.86e-06 2.88e-05 6.13e-06 3.71e-06 9.01e-06 8.14e-06 1.21e-05 4.15e-06 3.24e-06 6.62e-06 1.4e-05 1.48e-05 3.73e-06 3.11e-05 4.61e-06 7.6e-06 5.39e-06 1.6e-05 1.38e-05 1.05e-05 1.04e-06 1.11e-06 3.89e-06 7.28e-06 2.77e-06 1.85e-06 1.99e-06 2.49e-06 1.26e-06 9.74e-07 2.24e-05 1.82e-06 3.62e-07 7.99e-07 2.04e-06 1.98e-06 6.7e-07 4.84e-07
ENSG00000117016 \N -821133 2.64e-07 1.34e-07 4.91e-08 2.36e-07 8.83e-08 9.8e-08 1.44e-07 5.33e-08 1.45e-07 4.57e-08 1.57e-07 8.14e-08 1.47e-07 7.13e-08 6e-08 7.37e-08 3.93e-08 1.18e-07 5.97e-08 4.04e-08 1.08e-07 1.23e-07 1.44e-07 3.79e-08 1.55e-07 1.14e-07 1.07e-07 9.36e-08 1.05e-07 1.05e-07 1.02e-07 3.26e-08 3.16e-08 8e-08 3.02e-08 3.95e-08 5.51e-08 7.25e-08 6.43e-08 4.08e-08 4.41e-08 1.33e-07 3.35e-08 3.36e-08 7.79e-08 1.87e-08 1.26e-07 3.8e-09 4.85e-08
ENSG00000198754 OXCT2 73201 1.09e-05 1.71e-05 2.25e-06 9.91e-06 2.53e-06 5.23e-06 1.37e-05 2.15e-06 1.18e-05 5.31e-06 1.59e-05 5.88e-06 2.16e-05 4.46e-06 2.59e-06 7.01e-06 6.57e-06 9.66e-06 3.2e-06 2.82e-06 5.1e-06 1.08e-05 1.07e-05 3.32e-06 2.66e-05 4.39e-06 6.5e-06 4.18e-06 1.25e-05 1.03e-05 7.68e-06 9.96e-07 9.96e-07 3.53e-06 5.89e-06 2.59e-06 1.44e-06 1.94e-06 2.17e-06 1.04e-06 7.24e-07 1.71e-05 1.4e-06 3.62e-07 7.04e-07 1.73e-06 1.47e-06 7.01e-07 4.55e-07
ENSG00000237624 OXCT2P1 329593 1.01e-06 9.73e-07 3.27e-07 1.32e-06 1.78e-07 4.67e-07 8.7e-07 1.56e-07 1.2e-06 3.12e-07 1.35e-06 5.22e-07 1.53e-06 2.68e-07 3.35e-07 3.96e-07 8.28e-07 5.12e-07 4.24e-07 4.12e-07 2.54e-07 5.76e-07 7.63e-07 3.09e-07 1.96e-06 2.98e-07 5.82e-07 3.95e-07 6.85e-07 1.03e-06 5.62e-07 2.09e-07 5.89e-08 4.29e-07 5.85e-07 2.78e-07 5.04e-07 3.43e-07 3.87e-07 2.93e-07 8.48e-08 1.05e-06 1.37e-07 1.88e-07 1.78e-07 1.02e-07 7.89e-08 8.88e-08 4.96e-08
ENSG00000261798 AL033527.3 55573 1.41e-05 2.26e-05 2.63e-06 1.21e-05 2.36e-06 6.21e-06 2.04e-05 2.45e-06 1.6e-05 6.67e-06 2e-05 6.86e-06 2.88e-05 6.13e-06 3.75e-06 9.01e-06 8.14e-06 1.22e-05 4.15e-06 3.24e-06 6.62e-06 1.4e-05 1.48e-05 3.73e-06 3.11e-05 4.61e-06 7.6e-06 5.39e-06 1.59e-05 1.38e-05 1.05e-05 1.04e-06 1.12e-06 3.85e-06 7.28e-06 2.82e-06 1.87e-06 1.99e-06 2.49e-06 1.26e-06 9.74e-07 2.24e-05 1.82e-06 3.62e-07 7.99e-07 2.04e-06 1.98e-06 6.7e-07 4.84e-07
ENSG00000272145 NFYC-AS1 -847517 2.61e-07 1.27e-07 4.48e-08 2.25e-07 8.83e-08 1e-07 1.44e-07 5.33e-08 1.45e-07 4.57e-08 1.62e-07 7.78e-08 1.45e-07 6.76e-08 5.84e-08 7.17e-08 3.87e-08 1.18e-07 5.75e-08 4e-08 1.04e-07 1.26e-07 1.39e-07 4.05e-08 1.5e-07 1.14e-07 1.06e-07 9.32e-08 1.05e-07 1.07e-07 9.92e-08 3.65e-08 3.3e-08 8.25e-08 3.81e-08 3.93e-08 5.74e-08 7.63e-08 6.71e-08 3.6e-08 4.51e-08 1.33e-07 4.17e-08 1.95e-08 7.79e-08 1.86e-08 1.25e-07 3.81e-09 5.09e-08
ENSG00000284719 AL033527.5 45127 1.57e-05 2.63e-05 3.06e-06 1.29e-05 2.55e-06 7.14e-06 2.27e-05 3.03e-06 1.77e-05 7.65e-06 2.28e-05 7.98e-06 3.35e-05 7.61e-06 4.41e-06 1.01e-05 9.14e-06 1.46e-05 4.64e-06 4.17e-06 7.19e-06 1.71e-05 1.77e-05 4.56e-06 3.36e-05 5.29e-06 8.02e-06 6.25e-06 1.8e-05 1.58e-05 1.23e-05 1.03e-06 1.24e-06 4.13e-06 8.5e-06 3.41e-06 1.77e-06 2.39e-06 2.99e-06 1.6e-06 9.78e-07 2.67e-05 2.36e-06 3.62e-07 9.39e-07 2.34e-06 2.42e-06 6.58e-07 5.41e-07