Genes within 1Mb (chr1:39792920:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -90591 eQTL 1.54e-11 -0.143 0.0209 0.0 0.0 0.262
ENSG00000084072 PPIE 100738 eQTL 1.78e-05 -0.116 0.0269 0.00692 0.0 0.262
ENSG00000116985 BMP8B 4055 eQTL 5.40e-05 0.128 0.0317 0.0 0.0 0.262
ENSG00000116990 MYCL -109336 eQTL 1.72e-03 0.0574 0.0183 0.00344 0.00177 0.262
ENSG00000127603 MACF1 711604 eQTL 2.92e-02 0.0392 0.018 0.0 0.0 0.262
ENSG00000168389 MFSD2A -162192 eQTL 1.04e-02 0.0495 0.0193 0.0 0.0 0.262
ENSG00000187815 ZFP69 -684370 eQTL 6.80e-03 -0.0629 0.0232 0.0 0.0 0.262
ENSG00000198754 OXCT2 21572 eQTL 2.46e-05 0.15 0.0355 0.0 0.0 0.262
ENSG00000228477 AL663070.1 -169760 eQTL 2.07e-02 0.0659 0.0284 0.0016 0.0 0.262
ENSG00000261798 AL033527.3 3944 eQTL 1.45e-02 0.0928 0.0379 0.0 0.0 0.262
ENSG00000284719 AL033527.5 -6502 eQTL 2.73e-04 0.161 0.0439 0.0 0.0 0.262


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -90591 3.75e-05 2.43e-05 6.79e-06 1.72e-05 9.88e-06 1.98e-05 4.85e-05 8.05e-06 3.72e-05 2.24e-05 4.55e-05 2.12e-05 4.65e-05 1.5e-05 9.18e-06 2.14e-05 1.89e-05 2.95e-05 1.07e-05 1.15e-05 2.11e-05 4.19e-05 2.99e-05 1.12e-05 5.19e-05 1.29e-05 2.26e-05 1.69e-05 3.91e-05 1.81e-05 2.32e-05 3.49e-06 5.62e-06 1.11e-05 1.54e-05 5.9e-06 4.77e-06 6.43e-06 5.92e-06 4.8e-06 2.49e-06 3.15e-05 4.93e-06 1.57e-06 6.99e-06 1.1e-05 1.04e-05 5.08e-06 3.26e-06
ENSG00000084072 PPIE 100738 3.08e-05 2.04e-05 6.12e-06 1.61e-05 8.96e-06 1.81e-05 4.15e-05 7.24e-06 2.98e-05 1.89e-05 3.73e-05 1.7e-05 3.83e-05 1.24e-05 7.94e-06 1.63e-05 1.51e-05 2.39e-05 9e-06 9.64e-06 1.76e-05 3.37e-05 2.5e-05 9.9e-06 4.3e-05 1.04e-05 1.88e-05 1.46e-05 3.39e-05 1.55e-05 1.83e-05 2.91e-06 4.74e-06 9.71e-06 1.33e-05 5.04e-06 4.32e-06 5.8e-06 4.8e-06 4.34e-06 2.32e-06 2.65e-05 4.6e-06 1.38e-06 6.36e-06 9.91e-06 9.01e-06 4.12e-06 2.51e-06
ENSG00000116985 BMP8B 4055 0.00012 0.000129 4.61e-05 8.34e-05 6.18e-05 7.11e-05 0.000179 5.65e-05 0.000184 0.000143 0.000231 0.000111 0.000251 7.67e-05 4.99e-05 0.000141 9.21e-05 0.000172 5.66e-05 6e-05 0.000135 0.000188 0.000159 6.45e-05 0.000231 8.55e-05 0.000105 0.000111 0.000163 8.76e-05 0.000129 2.45e-05 3.19e-05 5.66e-05 6.61e-05 4.51e-05 3.21e-05 3.42e-05 4.6e-05 2.57e-05 2.23e-05 0.000123 1.83e-05 5.63e-06 2.99e-05 4.48e-05 3.88e-05 2.64e-05 1.98e-05
ENSG00000168389 MFSD2A -162192 9.72e-06 9.31e-06 1.99e-06 7.89e-06 2.96e-06 6.2e-06 1.17e-05 2.46e-06 1e-05 5.94e-06 1.27e-05 5.59e-06 1.18e-05 3.66e-06 3.51e-06 6.57e-06 4.59e-06 7.69e-06 3.29e-06 4.27e-06 6.79e-06 1.04e-05 7.37e-06 3.36e-06 1.31e-05 4.53e-06 7.12e-06 5.24e-06 1.14e-05 7.69e-06 5.62e-06 1.62e-06 1.47e-06 4.07e-06 6.09e-06 2.36e-06 1.87e-06 2.98e-06 1.99e-06 1.92e-06 1.7e-06 1.02e-05 2.34e-06 6.44e-07 2.7e-06 3.94e-06 3.64e-06 1.48e-06 1.02e-06
ENSG00000198754 OXCT2 21572 9.03e-05 8.55e-05 3.28e-05 5.71e-05 3.98e-05 5.16e-05 0.000139 3.7e-05 0.000125 9.75e-05 0.00016 7.29e-05 0.000167 5.54e-05 3.6e-05 9.27e-05 6.69e-05 0.000121 3.83e-05 4.13e-05 8.96e-05 0.000133 0.000115 4.28e-05 0.000163 5.33e-05 7.4e-05 6.97e-05 0.000119 6.61e-05 9.17e-05 1.51e-05 2.46e-05 4.07e-05 4.48e-05 2.66e-05 2.44e-05 2.54e-05 2.96e-05 1.78e-05 1.6e-05 8.72e-05 1.48e-05 3.68e-06 1.77e-05 3.04e-05 2.57e-05 2e-05 1.47e-05
ENSG00000228477 AL663070.1 -169760 8.53e-06 7.81e-06 1.59e-06 7.13e-06 2.51e-06 5.8e-06 1.05e-05 2.16e-06 9.1e-06 5.31e-06 1.19e-05 5.15e-06 1.13e-05 3.86e-06 2.92e-06 6.06e-06 4.02e-06 6.88e-06 3.02e-06 3.93e-06 6.05e-06 9.17e-06 6.78e-06 3.27e-06 1.22e-05 4.4e-06 6.33e-06 4.83e-06 9.86e-06 6.77e-06 4.97e-06 1.58e-06 1.4e-06 3.74e-06 5.44e-06 2.07e-06 1.78e-06 2.88e-06 1.64e-06 1.42e-06 1.64e-06 8.54e-06 1.79e-06 5.83e-07 2.43e-06 3.51e-06 3.46e-06 1.51e-06 6.66e-07
ENSG00000284719 AL033527.5 -6502 0.000114 0.00012 4.35e-05 7.97e-05 5.79e-05 6.8e-05 0.000174 5.15e-05 0.000171 0.000137 0.000214 0.000104 0.000225 7.05e-05 4.68e-05 0.000134 8.68e-05 0.000163 5.35e-05 5.78e-05 0.000125 0.00017 0.000154 5.99e-05 0.000213 7.81e-05 0.000101 0.000103 0.000155 8.5e-05 0.000121 2.25e-05 3.15e-05 5.52e-05 6.12e-05 4.26e-05 3.05e-05 3.38e-05 4.35e-05 2.44e-05 2.19e-05 0.000114 1.68e-05 4.99e-06 2.65e-05 4.36e-05 3.55e-05 2.48e-05 1.87e-05