Genes within 1Mb (chr1:39748703:G:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -134808 eQTL 2.50e-04 0.0745 0.0203 0.0 0.0 0.304
ENSG00000049089 COL9A2 -568583 eQTL 1.70e-02 0.0566 0.0237 0.00192 0.0 0.304
ENSG00000084072 PPIE 56521 eQTL 1.94e-120 0.526 0.0194 0.0 0.0 0.304
ENSG00000116985 BMP8B -40162 eQTL 1.83e-23 -0.296 0.0289 0.0 0.0 0.304
ENSG00000116990 MYCL -153553 eQTL 2.46e-02 -0.0393 0.0174 0.00109 0.0 0.304
ENSG00000198754 OXCT2 -22645 eQTL 6.71e-28 -0.362 0.032 0.0 0.0165 0.304
ENSG00000214114 MYCBP 875335 eQTL 4.10e-02 0.0272 0.0133 0.0 0.0 0.304
ENSG00000237624 OXCT2P1 233747 eQTL 2.82e-04 0.155 0.0425 0.0 0.0 0.304
ENSG00000284719 AL033527.5 -50719 eQTL 1.03e-10 -0.269 0.0412 0.00816 0.00156 0.304


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -134808 4.18e-06 4.94e-06 7.29e-07 2.95e-06 1.66e-06 1.59e-06 4.25e-06 1.09e-06 5.13e-06 2.44e-06 5.25e-06 3.54e-06 7.25e-06 2.4e-06 1.43e-06 3.42e-06 1.87e-06 3.49e-06 1.5e-06 1.15e-06 3.07e-06 4.97e-06 4.22e-06 1.49e-06 5.89e-06 1.96e-06 2.49e-06 1.89e-06 4.36e-06 4.23e-06 2.75e-06 4.17e-07 5.37e-07 1.65e-06 2.09e-06 1.18e-06 1.07e-06 4.38e-07 8.58e-07 5.03e-07 6.55e-07 5.59e-06 3.65e-07 1.59e-07 6.22e-07 1.02e-06 1.05e-06 7.35e-07 4.67e-07
ENSG00000049089 COL9A2 -568583 5.59e-07 3.12e-07 8.9e-08 2.96e-07 1.07e-07 1.71e-07 4.05e-07 1.38e-07 2.75e-07 2.06e-07 3.47e-07 2.55e-07 4.88e-07 1.01e-07 1.26e-07 1.63e-07 1.85e-07 3.04e-07 1.56e-07 1.15e-07 1.87e-07 2.76e-07 2.77e-07 1.19e-07 4.11e-07 2.33e-07 1.97e-07 1.85e-07 2.19e-07 3.3e-07 1.88e-07 6.06e-08 5.58e-08 1.16e-07 2.58e-07 7.98e-08 1.13e-07 8.15e-08 3.82e-08 5.64e-08 4.36e-08 2.74e-07 2.47e-08 1.98e-08 8.68e-08 1.88e-08 8.75e-08 1.2e-08 4.97e-08
ENSG00000084072 PPIE 56521 8.09e-06 9.82e-06 1.74e-06 5.85e-06 2.52e-06 4.24e-06 1.12e-05 2.18e-06 1e-05 5.57e-06 1.24e-05 5.63e-06 1.6e-05 3.66e-06 2.94e-06 6.33e-06 4.98e-06 7.75e-06 3.07e-06 2.84e-06 5.71e-06 9.86e-06 8.49e-06 3.43e-06 1.48e-05 4.27e-06 5.24e-06 4.51e-06 1.13e-05 9.87e-06 5.93e-06 9.98e-07 1.22e-06 3.55e-06 4.71e-06 2.8e-06 1.83e-06 1.95e-06 2.11e-06 1.07e-06 1.05e-06 1.25e-05 1.48e-06 2.36e-07 9.39e-07 1.83e-06 1.75e-06 7e-07 4.63e-07
ENSG00000116985 BMP8B -40162 1.03e-05 1.26e-05 2.57e-06 7.44e-06 2.4e-06 5.66e-06 1.56e-05 2.4e-06 1.22e-05 6.01e-06 1.58e-05 6.55e-06 2.21e-05 4.46e-06 3.97e-06 7.34e-06 6.9e-06 1.04e-05 3.59e-06 3.59e-06 6.47e-06 1.2e-05 1.14e-05 4.37e-06 2.07e-05 4.9e-06 7.15e-06 5.39e-06 1.44e-05 1.36e-05 8.2e-06 9.55e-07 1.44e-06 4.09e-06 5.76e-06 3.71e-06 1.77e-06 2.39e-06 2.68e-06 1.76e-06 1.3e-06 1.51e-05 1.63e-06 2.86e-07 1.37e-06 2.27e-06 1.98e-06 8.91e-07 7.82e-07
ENSG00000116990 MYCL -153553 4.19e-06 4.65e-06 9.13e-07 2.42e-06 1.21e-06 1.21e-06 3.02e-06 9.6e-07 4.18e-06 2.09e-06 4.14e-06 3.3e-06 7.02e-06 1.84e-06 1.44e-06 2.66e-06 2.04e-06 2.72e-06 1.44e-06 1.02e-06 2.67e-06 4.25e-06 3.31e-06 1.62e-06 4.97e-06 1.67e-06 2.41e-06 1.67e-06 4.26e-06 3.87e-06 1.98e-06 5.58e-07 6.31e-07 1.75e-06 2e-06 9e-07 9.16e-07 4.24e-07 9.49e-07 3.57e-07 4.69e-07 4.63e-06 3.82e-07 1.8e-07 4.86e-07 5.88e-07 8.71e-07 5.05e-07 3.29e-07
ENSG00000117000 \N -412684 1.24e-06 8.47e-07 2.81e-07 3.22e-07 1.54e-07 3.2e-07 7e-07 3.45e-07 8.29e-07 2.81e-07 1.07e-06 5.51e-07 1.22e-06 2.12e-07 4.15e-07 4.11e-07 7.47e-07 5.16e-07 3.95e-07 4.12e-07 2.97e-07 6.27e-07 5.66e-07 4.09e-07 1.36e-06 2.47e-07 5.05e-07 4.23e-07 6.91e-07 8.89e-07 4.39e-07 5.02e-08 1.37e-07 3.17e-07 3.4e-07 3.36e-07 3.77e-07 1.46e-07 1.33e-07 9.5e-09 1.79e-07 8.03e-07 6.94e-08 5.89e-09 1.8e-07 7.09e-08 1.78e-07 8.89e-08 9.32e-08
ENSG00000117016 \N -916979 2.76e-07 1.27e-07 5.49e-08 1.9e-07 9.87e-08 8.33e-08 1.6e-07 5.56e-08 1.45e-07 6.4e-08 1.52e-07 1.05e-07 1.59e-07 7.37e-08 6.25e-08 7.5e-08 4.18e-08 1.44e-07 6.75e-08 4.92e-08 1.27e-07 1.26e-07 1.5e-07 3.17e-08 1.55e-07 1.22e-07 1.13e-07 9.74e-08 1.23e-07 9.88e-08 1.02e-07 3.6e-08 3.59e-08 8.89e-08 3.81e-08 2.68e-08 5.35e-08 8.57e-08 6.76e-08 4.19e-08 5.44e-08 1.4e-07 4.87e-08 1.13e-08 3.83e-08 1.65e-08 1.15e-07 1.96e-09 4.82e-08
ENSG00000198754 OXCT2 -22645 1.41e-05 1.76e-05 3.73e-06 1.07e-05 3.29e-06 8.2e-06 2.42e-05 3.4e-06 1.77e-05 8.88e-06 2.23e-05 8.43e-06 3.19e-05 7.58e-06 5.11e-06 1.03e-05 1e-05 1.53e-05 6e-06 4.99e-06 8.63e-06 1.76e-05 1.77e-05 6.42e-06 2.89e-05 5.53e-06 8.01e-06 7.92e-06 2.04e-05 2.06e-05 1.24e-05 1.61e-06 2.23e-06 5.81e-06 7.96e-06 4.54e-06 2.65e-06 2.83e-06 3.63e-06 2.85e-06 1.72e-06 2.07e-05 2.66e-06 3.99e-07 2.11e-06 2.69e-06 3.21e-06 1.5e-06 1.39e-06
ENSG00000261798 \N -40273 1.03e-05 1.27e-05 2.53e-06 7.44e-06 2.4e-06 5.69e-06 1.56e-05 2.4e-06 1.22e-05 6.01e-06 1.58e-05 6.55e-06 2.18e-05 4.46e-06 3.88e-06 7.34e-06 6.86e-06 1.04e-05 3.59e-06 3.61e-06 6.47e-06 1.19e-05 1.14e-05 4.37e-06 2.06e-05 4.9e-06 7.15e-06 5.39e-06 1.44e-05 1.36e-05 8.2e-06 9.55e-07 1.47e-06 4.09e-06 5.76e-06 3.71e-06 1.78e-06 2.38e-06 2.68e-06 1.76e-06 1.3e-06 1.51e-05 1.63e-06 2.86e-07 1.37e-06 2.27e-06 1.96e-06 8.47e-07 7.39e-07
ENSG00000284719 AL033527.5 -50719 8.88e-06 1.12e-05 1.98e-06 6.3e-06 2.32e-06 4.74e-06 1.19e-05 2.21e-06 1.03e-05 5.58e-06 1.36e-05 5.74e-06 1.8e-05 3.63e-06 3.33e-06 6.6e-06 5.49e-06 8.43e-06 3.32e-06 3.14e-06 6.05e-06 1.04e-05 9.64e-06 3.58e-06 1.65e-05 4.31e-06 5.93e-06 4.77e-06 1.24e-05 1.1e-05 6.69e-06 9.92e-07 1.25e-06 3.72e-06 4.89e-06 2.85e-06 1.77e-06 2.03e-06 2.08e-06 1.27e-06 1.12e-06 1.3e-05 1.49e-06 2.64e-07 9.9e-07 1.74e-06 1.74e-06 6.59e-07 5.37e-07