Genes within 1Mb (chr1:39675377:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000090621 PABPC4 98587 eQTL 1.58e-02 -0.0332 0.0137 0.0 0.0 0.135
ENSG00000116954 RRAGC 815605 eQTL 2.31e-02 -0.0617 0.0271 0.00186 0.0 0.135
ENSG00000116983 HPCAL4 -16108 eQTL 1.56e-07 0.107 0.0203 0.0 0.0 0.135
ENSG00000131236 CAP1 -364856 eQTL 1.55e-02 0.0304 0.0125 0.00244 0.0 0.135
ENSG00000174574 AKIRIN1 684101 eQTL 4.69e-02 0.0239 0.012 0.0 0.0 0.135
ENSG00000183682 BMP8A 183741 eQTL 6.52e-03 0.0985 0.0361 0.0 0.0 0.135
ENSG00000228477 AL663070.1 -287303 eQTL 5.82e-02 0.0676 0.0357 0.00114 0.0 0.135
ENSG00000237624 OXCT2P1 160421 eQTL 4.66e-02 -0.112 0.0562 0.0 0.0 0.135
ENSG00000243970 PPIEL 115706 eQTL 5.04e-03 0.102 0.0362 0.0 0.0 0.135
ENSG00000284719 AL033527.5 -124045 eQTL 8.38e-03 0.146 0.0552 0.0 0.0 0.135


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000090621 PABPC4 98587 5.61e-06 2.87e-05 9.68e-07 6.5e-06 8.47e-07 1.7e-06 8.08e-06 1.22e-06 5.22e-06 3.42e-06 1.06e-05 6.06e-06 1.11e-05 3.92e-06 1.2e-06 4e-06 2.76e-06 3.74e-06 1.55e-06 8.96e-07 3.07e-06 7.72e-06 5.05e-06 1.76e-06 9.57e-06 1.95e-06 3.61e-06 2.2e-06 5.45e-06 4.04e-06 4.69e-06 3.45e-07 5.7e-07 1.44e-06 3.31e-06 1.18e-06 9.06e-07 4.47e-07 9.46e-07 1e-06 2.74e-07 9.93e-06 6.81e-07 1.14e-07 3.27e-07 1.1e-06 7.71e-07 1.82e-07 1.58e-07
ENSG00000116954 RRAGC 815605 2.61e-07 1.56e-07 3.72e-08 1.9e-07 9.91e-08 9.3e-08 1.44e-07 5.49e-08 1.44e-07 4.57e-08 1.54e-07 8.55e-08 1.41e-07 6.76e-08 5.53e-08 7.26e-08 4.63e-08 1.14e-07 5.36e-08 3.59e-08 1.04e-07 1.23e-07 1.32e-07 4.53e-08 1.32e-07 1.19e-07 1.11e-07 9.15e-08 1.02e-07 1.1e-07 9.64e-08 3.88e-08 2.74e-08 8.25e-08 8.74e-08 3.93e-08 4.67e-08 8.91e-08 8.19e-08 3e-08 3.16e-08 1.33e-07 4.12e-08 0.0 9.21e-08 1.69e-08 1.26e-07 4.5e-09 4.74e-08
ENSG00000116983 HPCAL4 -16108 1.47e-05 7.84e-05 4.04e-06 1.38e-05 2.32e-06 5.89e-06 2.27e-05 3.51e-06 1.77e-05 9.31e-06 2.93e-05 2.22e-05 2.88e-05 1.57e-05 5.31e-06 9.99e-06 8.8e-06 1.52e-05 3.61e-06 2.8e-06 6.85e-06 2.06e-05 1.84e-05 5.19e-06 2.75e-05 5.01e-06 8.26e-06 8.92e-06 1.67e-05 9.42e-06 1.55e-05 9.89e-07 1.25e-06 3.69e-06 8.71e-06 3.47e-06 1.73e-06 1.95e-06 2.35e-06 3.11e-06 8.81e-07 2.26e-05 2.7e-06 1.87e-07 9.84e-07 2.59e-06 1.93e-06 7.28e-07 4.64e-07
ENSG00000131236 CAP1 -364856 1.04e-06 2.3e-06 2.05e-07 1.14e-06 1.11e-07 2.16e-07 7.54e-07 1.45e-07 8.66e-07 2.85e-07 1.41e-06 6.16e-07 1.49e-06 2.79e-07 3.56e-07 3.36e-07 4.73e-07 4.25e-07 3.06e-07 8.1e-08 2.17e-07 6.48e-07 5.63e-07 1.76e-07 1.64e-06 2.71e-07 4.62e-07 3.78e-07 4.22e-07 5.56e-07 5.48e-07 4.58e-08 4.34e-08 1.39e-07 3.52e-07 8.75e-08 1.13e-07 6.66e-08 3.82e-08 1.82e-08 4.58e-08 1.29e-06 3.19e-08 7.3e-09 4.91e-08 1.48e-08 1.04e-07 0.0 4.55e-08
ENSG00000183682 BMP8A 183741 2.78e-06 9.73e-06 5.8e-07 3.48e-06 3.85e-07 7.89e-07 2.31e-06 6.45e-07 2.68e-06 1.4e-06 4.33e-06 3.3e-06 5.73e-06 1.97e-06 8.93e-07 1.62e-06 1.41e-06 2.31e-06 9.43e-07 4.92e-07 9e-07 3.49e-06 2.58e-06 1.02e-06 4.42e-06 1.33e-06 1.48e-06 1.81e-06 2.07e-06 1.61e-06 1.94e-06 1.89e-07 1.88e-07 9.49e-07 1.97e-06 7.45e-07 7.27e-07 2.74e-07 6.78e-07 3.8e-07 2.72e-07 4.75e-06 4.37e-07 3.4e-08 2.22e-07 3.24e-07 2.37e-07 3.73e-08 1.55e-07
ENSG00000243970 PPIEL 115706 4.8e-06 2.2e-05 6.38e-07 5.17e-06 6.3e-07 1.27e-06 6.01e-06 1.09e-06 4.49e-06 2.76e-06 8.9e-06 5.47e-06 1e-05 3.78e-06 1.02e-06 3.77e-06 1.88e-06 3.82e-06 1.48e-06 1.21e-06 2.67e-06 6.58e-06 4.64e-06 1.39e-06 8.71e-06 1.65e-06 2.51e-06 1.82e-06 4.41e-06 3.32e-06 3.97e-06 2.5e-07 4.15e-07 1.84e-06 2.44e-06 9.03e-07 9.21e-07 4.57e-07 1.23e-06 9.06e-07 3.3e-07 8.32e-06 3.83e-07 8.98e-08 3.21e-07 9.82e-07 8.28e-07 2.22e-07 2e-07
ENSG00000284719 AL033527.5 -124045 4.54e-06 1.93e-05 6.25e-07 4.85e-06 5.12e-07 1.09e-06 5.13e-06 9.6e-07 4.9e-06 2.88e-06 8.62e-06 5.23e-06 8.92e-06 3.83e-06 1.21e-06 3.26e-06 1.82e-06 3.49e-06 1.29e-06 1.39e-06 2.28e-06 5.5e-06 4.56e-06 1.62e-06 8.15e-06 1.37e-06 2.32e-06 1.44e-06 4.48e-06 3e-06 3.5e-06 2.74e-07 4.55e-07 1.72e-06 2.14e-06 9.97e-07 9.25e-07 4.12e-07 1.32e-06 8.19e-07 3.56e-07 8.48e-06 3.83e-07 9.66e-08 3.49e-07 6.91e-07 8.54e-07 2.65e-07 2.3e-07