Genes within 1Mb (chr1:39658182:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 -225329 sc-eQTL 3.83e-01 -0.228 0.26 0.056 PB L2
ENSG00000049089 COL9A2 -659631 sc-eQTL 2.38e-02 0.516 0.225 0.056 PB L2
ENSG00000084070 SMAP2 -686668 sc-eQTL 1.70e-01 -0.248 0.18 0.056 PB L2
ENSG00000084072 PPIE -34000 sc-eQTL 1.21e-01 0.363 0.232 0.056 PB L2
ENSG00000084073 ZMPSTE24 -600054 sc-eQTL 3.19e-01 -0.212 0.212 0.056 PB L2
ENSG00000090621 PABPC4 81392 sc-eQTL 9.61e-01 0.00698 0.142 0.056 PB L2
ENSG00000116954 RRAGC 798410 sc-eQTL 8.28e-01 -0.054 0.248 0.056 PB L2
ENSG00000116985 BMP8B -130683 sc-eQTL 5.63e-01 -0.0949 0.163 0.056 PB L2
ENSG00000117000 RLF -503205 sc-eQTL 3.89e-01 0.227 0.262 0.056 PB L2
ENSG00000117010 ZNF684 -873391 sc-eQTL 9.83e-01 -0.00478 0.219 0.056 PB L2
ENSG00000127603 MACF1 576866 sc-eQTL 3.30e-01 -0.216 0.221 0.056 PB L2
ENSG00000131236 CAP1 -382051 sc-eQTL 1.40e-01 -0.324 0.218 0.056 PB L2
ENSG00000131238 PPT1 -439545 sc-eQTL 4.47e-01 0.183 0.24 0.056 PB L2
ENSG00000164002 EXO5 -850559 sc-eQTL 9.63e-01 -0.0113 0.241 0.056 PB L2
ENSG00000168653 NDUFS5 631864 sc-eQTL 2.68e-01 0.133 0.119 0.056 PB L2
ENSG00000174574 AKIRIN1 666906 sc-eQTL 4.12e-02 -0.491 0.238 0.056 PB L2
ENSG00000187815 ZFP69 -819108 sc-eQTL 8.12e-01 -0.0564 0.237 0.056 PB L2
ENSG00000198754 OXCT2 -113166 sc-eQTL 1.55e-01 0.301 0.21 0.056 PB L2
ENSG00000214114 MYCBP 784814 sc-eQTL 2.83e-01 -0.144 0.133 0.056 PB L2
ENSG00000259943 AL050341.2 -599785 sc-eQTL 3.28e-01 -0.244 0.249 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084072 PPIE -34000 eQTL 0.0257 -0.124 0.0556 0.0 0.0 0.0442
ENSG00000090621 PABPC4 81392 eQTL 1.96e-08 -0.126 0.0222 0.0 0.0 0.0442
ENSG00000116983 HPCAL4 -33303 eQTL 6.24e-07 -0.167 0.0333 0.0 0.0 0.0442
ENSG00000131238 PPT1 -439545 eQTL 4.78e-03 -0.187 0.066 0.0 0.0 0.0442
ENSG00000164002 EXO5 -850559 eQTL 2.38e-02 0.11 0.0488 0.0 0.0 0.0442
ENSG00000183682 BMP8A 166546 eQTL 0.00015 0.225 0.059 0.0 0.0 0.0442
ENSG00000243970 PPIEL 98511 eQTL 4.24e-07 0.3 0.0588 0.0 0.0 0.0442


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000090621 PABPC4 81392 1.39e-05 2.63e-05 2.57e-06 1.29e-05 2.58e-06 5.81e-06 1.91e-05 2.16e-06 1.73e-05 7.23e-06 1.79e-05 7.33e-06 2.89e-05 7.58e-06 4.41e-06 9.01e-06 7.73e-06 1.24e-05 3.49e-06 3.13e-06 6.56e-06 1.55e-05 1.3e-05 3.58e-06 2.57e-05 4.65e-06 7.62e-06 5.4e-06 1.44e-05 1.15e-05 1e-05 1.12e-06 1.17e-06 3.69e-06 6.37e-06 2.53e-06 1.78e-06 2e-06 2.84e-06 1.26e-06 1.03e-06 2.28e-05 1.62e-06 2.91e-07 7.78e-07 1.79e-06 1.87e-06 7.04e-07 4.74e-07
ENSG00000116983 HPCAL4 -33303 2.34e-05 3.46e-05 3.55e-06 1.51e-05 2.85e-06 8.25e-06 2.75e-05 3.37e-06 2.34e-05 9.47e-06 2.66e-05 1.04e-05 3.88e-05 1.09e-05 5.24e-06 1.09e-05 1.08e-05 1.92e-05 4.65e-06 4.8e-06 8.31e-06 2.36e-05 1.98e-05 5.03e-06 3.43e-05 5.31e-06 8.52e-06 8.02e-06 2.1e-05 1.7e-05 1.29e-05 1.41e-06 1.38e-06 4.94e-06 9.06e-06 3.28e-06 2.04e-06 2.4e-06 3.71e-06 2.18e-06 1.08e-06 3.45e-05 2.52e-06 3.6e-07 1.09e-06 2.52e-06 2.95e-06 6.52e-07 7.39e-07
ENSG00000131238 PPT1 -439545 1.28e-06 1.55e-06 2.75e-07 1.68e-06 2.14e-07 6.45e-07 1.57e-06 2.98e-07 1.73e-06 3.85e-07 1.5e-06 6.08e-07 2.31e-06 5.4e-07 5.08e-07 8.25e-07 9.26e-07 5.76e-07 7.7e-07 6.8e-07 6.17e-07 1.69e-06 8.95e-07 5.86e-07 2.06e-06 3.47e-07 1.02e-06 4.98e-07 1.17e-06 1.32e-06 6.78e-07 2.05e-07 2.08e-07 7.04e-07 8.27e-07 4.62e-07 7.55e-07 4.38e-07 4.96e-07 1.16e-07 1.16e-07 1.51e-06 5e-07 1.66e-07 1.93e-07 2.45e-07 1.41e-07 3.7e-08 6.27e-08
ENSG00000183682 BMP8A 166546 5.49e-06 1.22e-05 1.24e-06 8.32e-06 1.65e-06 3.41e-06 9.71e-06 1.24e-06 9.51e-06 4.22e-06 8.88e-06 3.71e-06 1.29e-05 3.79e-06 1.69e-06 5.7e-06 3.64e-06 3.89e-06 2.15e-06 1.8e-06 3.08e-06 8.06e-06 5.83e-06 2.01e-06 1.11e-05 2.21e-06 4.67e-06 1.73e-06 6.74e-06 7.05e-06 4.4e-06 1.02e-06 5.74e-07 2.34e-06 3.62e-06 1.12e-06 1.73e-06 1.84e-06 2.02e-06 6.39e-07 4.59e-07 1.01e-05 1.02e-06 2.5e-07 4.7e-07 1.02e-06 9.85e-07 6.46e-07 5.76e-07
ENSG00000237624 \N 143226 7.7e-06 1.4e-05 1.33e-06 9.42e-06 1.76e-06 3.97e-06 1.02e-05 1.49e-06 1.06e-05 5.11e-06 1.06e-05 5.06e-06 1.62e-05 4.06e-06 2.42e-06 6.52e-06 3.89e-06 6.43e-06 2.63e-06 2.64e-06 4.39e-06 1.01e-05 6.96e-06 2.83e-06 1.31e-05 2.82e-06 5.33e-06 2.62e-06 7.98e-06 7.73e-06 5.43e-06 1.02e-06 8.05e-07 2.78e-06 4.58e-06 1.46e-06 1.82e-06 1.91e-06 2.15e-06 8.9e-07 6.93e-07 1.3e-05 1.28e-06 2.64e-07 6.98e-07 1.51e-06 8.75e-07 6.93e-07 4.36e-07
ENSG00000243970 PPIEL 98511 1.14e-05 2.24e-05 2.27e-06 1.22e-05 2.42e-06 5.2e-06 1.51e-05 2.15e-06 1.62e-05 6.37e-06 1.54e-05 6.53e-06 2.52e-05 6.39e-06 3.96e-06 8.06e-06 6.55e-06 1.09e-05 2.99e-06 2.84e-06 5.84e-06 1.34e-05 1.07e-05 3.31e-06 2.27e-05 4.3e-06 7.48e-06 4.77e-06 1.29e-05 9.8e-06 8.26e-06 1.03e-06 1.19e-06 3.53e-06 5.77e-06 2.18e-06 1.77e-06 1.91e-06 2.35e-06 9.9e-07 8.79e-07 1.9e-05 1.46e-06 2.85e-07 6.97e-07 1.72e-06 1.8e-06 7.13e-07 4.84e-07