Genes within 1Mb (chr1:39529402:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084072 PPIE -162780 eQTL 1.58e-02 -0.0778 0.0322 0.0 0.0 0.169
ENSG00000090621 PABPC4 -47388 eQTL 1.22e-23 -0.128 0.0124 0.0 0.0 0.169
ENSG00000116983 HPCAL4 -162083 eQTL 5.12e-05 -0.0786 0.0193 0.0 0.0 0.169
ENSG00000127603 MACF1 448086 eQTL 8.26e-04 0.0714 0.0213 0.0 0.0 0.169
ENSG00000168653 NDUFS5 503084 eQTL 5.34e-03 0.0683 0.0245 0.0 0.0 0.169
ENSG00000183682 BMP8A 37766 eQTL 4.74e-15 0.265 0.0333 0.357 0.372 0.169
ENSG00000228477 AL663070.1 -433278 eQTL 3.60e-02 0.071 0.0338 0.00101 0.0 0.169
ENSG00000237624 OXCT2P1 14446 eQTL 2.78e-08 0.294 0.0525 0.0515 0.0565 0.169
ENSG00000243970 PPIEL -30269 eQTL 1.21e-21 0.322 0.0329 0.361 0.327 0.169


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084072 PPIE -162780 3.58e-06 3.13e-06 3.22e-07 1.86e-06 4.77e-07 8.89e-07 2.18e-06 7.37e-07 2.13e-06 1.17e-06 2.9e-06 1.53e-06 4.27e-06 1.42e-06 8.86e-07 1.54e-06 1.46e-06 2.24e-06 1.36e-06 1.41e-06 1.21e-06 3.02e-06 2.38e-06 9.71e-07 4.02e-06 1.33e-06 1.48e-06 1.78e-06 2.39e-06 2.17e-06 1.94e-06 3.98e-07 5.87e-07 1.22e-06 1.82e-06 9.92e-07 8.38e-07 4.46e-07 1.11e-06 3.46e-07 1.67e-07 3.32e-06 5.93e-07 1.6e-07 2.73e-07 4e-07 8.54e-07 1.98e-07 2.04e-07
ENSG00000090621 PABPC4 -47388 1.12e-05 1.26e-05 1.51e-06 7.18e-06 2.58e-06 5.13e-06 1.27e-05 2.25e-06 1.06e-05 5.48e-06 1.43e-05 6.24e-06 1.85e-05 4.18e-06 3.35e-06 6.67e-06 5.49e-06 8.11e-06 3.04e-06 2.84e-06 6.18e-06 1.06e-05 9.26e-06 3.3e-06 1.75e-05 4.28e-06 6.28e-06 5.03e-06 1.24e-05 9.42e-06 6.68e-06 1.04e-06 1.14e-06 3.43e-06 5.21e-06 2.86e-06 1.9e-06 1.93e-06 2.19e-06 1.03e-06 1.01e-06 1.37e-05 1.58e-06 1.88e-07 8.27e-07 1.67e-06 1.74e-06 7.53e-07 4.67e-07
ENSG00000116983 HPCAL4 -162083 3.53e-06 3.09e-06 3.23e-07 1.88e-06 4.78e-07 8.37e-07 2.22e-06 7.56e-07 2.08e-06 1.21e-06 3.02e-06 1.57e-06 4.26e-06 1.36e-06 9.25e-07 1.54e-06 1.49e-06 2.26e-06 1.38e-06 1.39e-06 1.26e-06 3e-06 2.42e-06 9.91e-07 4.05e-06 1.34e-06 1.49e-06 1.77e-06 2.45e-06 2.2e-06 2e-06 3.98e-07 5.68e-07 1.18e-06 1.84e-06 9.6e-07 8.38e-07 4.46e-07 1.14e-06 3.46e-07 1.67e-07 3.33e-06 5.78e-07 1.6e-07 2.74e-07 4.01e-07 8.41e-07 1.98e-07 2.05e-07
ENSG00000127603 MACF1 448086 7.76e-07 4e-07 1.05e-07 3.96e-07 9.26e-08 2.01e-07 4.42e-07 9.91e-08 2.75e-07 2.06e-07 4.97e-07 3.08e-07 6.08e-07 1.1e-07 1.45e-07 1.46e-07 1.73e-07 3.3e-07 1.77e-07 1.53e-07 1.91e-07 2.86e-07 2.67e-07 1.23e-07 5.53e-07 2.07e-07 2.52e-07 2.44e-07 2.31e-07 3.71e-07 2e-07 5.77e-08 5.68e-08 1.23e-07 3.34e-07 8.17e-08 1.05e-07 9.71e-08 4.04e-08 2.8e-08 7.96e-08 2.91e-07 2.88e-08 5.89e-09 1.49e-07 1.22e-08 8.01e-08 1.28e-08 5.44e-08
ENSG00000131236 \N -510831 5.37e-07 2.5e-07 7.76e-08 3.19e-07 1.05e-07 1.54e-07 3.33e-07 7.65e-08 2.01e-07 1.39e-07 2.98e-07 1.91e-07 4.05e-07 8.55e-08 8.45e-08 1.06e-07 8.64e-08 2.75e-07 9.71e-08 8.11e-08 1.39e-07 2.15e-07 1.89e-07 6.52e-08 3.27e-07 1.71e-07 1.78e-07 1.67e-07 1.47e-07 2e-07 1.59e-07 7.03e-08 5.07e-08 1.15e-07 2.43e-07 5.23e-08 8.87e-08 7.62e-08 4.9e-08 6.05e-08 2.87e-08 2e-07 2.28e-08 1.55e-08 1.1e-07 1.3e-08 9.84e-08 3.2e-09 4.59e-08
ENSG00000168653 NDUFS5 503084 5.59e-07 2.56e-07 7.92e-08 3.57e-07 1.05e-07 1.57e-07 3.42e-07 8.11e-08 2.04e-07 1.46e-07 3.25e-07 1.96e-07 4.27e-07 8.85e-08 9.2e-08 1.1e-07 8.74e-08 2.83e-07 9.97e-08 8.25e-08 1.48e-07 2.24e-07 2e-07 6.65e-08 3.55e-07 1.76e-07 1.85e-07 1.77e-07 1.54e-07 2.01e-07 1.71e-07 5.99e-08 5.17e-08 1.17e-07 2.58e-07 5.32e-08 9.11e-08 7.86e-08 4.99e-08 5.61e-08 3.46e-08 2.15e-07 2.32e-08 1.05e-08 1.17e-07 1.32e-08 1.04e-07 3.3e-09 4.66e-08
ENSG00000183682 BMP8A 37766 1.34e-05 1.46e-05 2.38e-06 8.64e-06 2.32e-06 6.16e-06 1.83e-05 2.25e-06 1.32e-05 6.62e-06 1.76e-05 6.86e-06 2.38e-05 5.14e-06 4.13e-06 8.06e-06 7.29e-06 1.01e-05 3.54e-06 3.29e-06 6.67e-06 1.27e-05 1.21e-05 3.99e-06 2.27e-05 4.6e-06 7.48e-06 5.98e-06 1.48e-05 1.2e-05 8.58e-06 1.08e-06 1.32e-06 3.7e-06 6.02e-06 2.88e-06 1.73e-06 2.02e-06 2.14e-06 1.41e-06 1.07e-06 1.68e-05 1.79e-06 2.2e-07 9.29e-07 2.14e-06 1.99e-06 6.83e-07 5e-07
ENSG00000228477 AL663070.1 -433278 8.43e-07 4.93e-07 9.71e-08 4.31e-07 9.86e-08 2.16e-07 4.93e-07 1.11e-07 3.03e-07 2.16e-07 5.93e-07 3.27e-07 6.98e-07 1.17e-07 1.5e-07 1.63e-07 2.25e-07 3.56e-07 1.93e-07 1.69e-07 1.87e-07 3.13e-07 3.02e-07 1.32e-07 6.18e-07 2.29e-07 2.71e-07 2.65e-07 2.76e-07 4.27e-07 2.31e-07 5.3e-08 5.6e-08 1.36e-07 3.38e-07 7.57e-08 8.43e-08 1.08e-07 3.82e-08 2.24e-08 8.35e-08 3.43e-07 4.12e-08 1.22e-08 1.67e-07 1.31e-08 1.1e-07 2.31e-08 5.56e-08
ENSG00000237624 OXCT2P1 14446 2.78e-05 2.83e-05 5.33e-06 1.45e-05 5.16e-06 1.28e-05 3.84e-05 3.93e-06 2.57e-05 1.33e-05 3.3e-05 1.46e-05 4.29e-05 1.24e-05 6.25e-06 1.53e-05 1.48e-05 2.14e-05 7.49e-06 6.05e-06 1.29e-05 2.79e-05 2.66e-05 8.06e-06 3.84e-05 6.74e-06 1.18e-05 1.14e-05 2.89e-05 2.32e-05 1.69e-05 1.61e-06 2.42e-06 6.68e-06 1.04e-05 5.22e-06 2.85e-06 3.14e-06 4.29e-06 3.17e-06 1.72e-06 3.22e-05 2.95e-06 3.62e-07 2.18e-06 3.54e-06 3.79e-06 1.45e-06 1.55e-06
ENSG00000243970 PPIEL -30269 1.51e-05 1.73e-05 2.63e-06 1.01e-05 2.75e-06 7.14e-06 2.2e-05 2.9e-06 1.65e-05 8.14e-06 2.06e-05 7.98e-06 2.87e-05 7.03e-06 4.83e-06 9.23e-06 8.27e-06 1.23e-05 4.31e-06 4.08e-06 7.79e-06 1.55e-05 1.54e-05 4.8e-06 2.64e-05 5.11e-06 7.95e-06 7.64e-06 1.73e-05 1.49e-05 1.08e-05 1.16e-06 1.46e-06 4.04e-06 7.03e-06 3.77e-06 1.79e-06 2.41e-06 2.73e-06 2.03e-06 1.21e-06 1.96e-05 2.48e-06 2.64e-07 1.41e-06 2.49e-06 2.5e-06 9.75e-07 7.87e-07