Genes within 1Mb (chr1:39439916:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -443595 eQTL 1.12e-02 -0.0634 0.025 0.0 0.0 0.163
ENSG00000084072 PPIE -252266 eQTL 2.42e-03 -0.096 0.0316 0.0 0.0 0.163
ENSG00000090621 PABPC4 -136874 eQTL 3.11e-13 -0.0924 0.0125 0.0 0.0 0.163
ENSG00000116983 HPCAL4 -251569 eQTL 5.82e-03 -0.0527 0.0191 0.0 0.0 0.163
ENSG00000127603 MACF1 358600 eQTL 1.07e-08 0.119 0.0207 0.0 0.0 0.163
ENSG00000183682 BMP8A -51720 eQTL 2.43e-09 0.2 0.0332 0.0 0.0 0.163
ENSG00000228477 AL663070.1 -522764 eQTL 8.84e-03 0.087 0.0332 0.00191 0.0 0.163
ENSG00000237624 OXCT2P1 -75040 eQTL 2.36e-07 0.269 0.0517 0.0 0.0 0.163
ENSG00000243970 PPIEL -119755 eQTL 2.35e-12 0.235 0.033 0.0 0.0 0.163


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084072 PPIE -252266 1.31e-06 9.82e-07 3.04e-07 1.07e-06 3.5e-07 5.91e-07 1.54e-06 3.56e-07 1.46e-06 5.63e-07 1.87e-06 7.82e-07 2.29e-06 2.89e-07 5.42e-07 9.19e-07 9.01e-07 7.05e-07 8.67e-07 6.26e-07 7.16e-07 1.63e-06 8.98e-07 5.54e-07 2.23e-06 4.39e-07 9.18e-07 7.03e-07 1.46e-06 1.23e-06 6.63e-07 1.89e-07 2.02e-07 6.95e-07 5.6e-07 4.53e-07 5.58e-07 2.29e-07 4.99e-07 2.93e-07 2.82e-07 1.58e-06 1.24e-07 3.4e-08 2.5e-07 1.38e-07 2.17e-07 5.32e-08 1.46e-07
ENSG00000090621 PABPC4 -136874 4e-06 3.22e-06 4.68e-07 1.89e-06 7.59e-07 8.28e-07 2.52e-06 8.04e-07 2.27e-06 1.35e-06 2.98e-06 1.72e-06 4.58e-06 1.28e-06 8.88e-07 1.98e-06 1.64e-06 2.15e-06 1.57e-06 1.19e-06 1.4e-06 3.41e-06 3.17e-06 1.6e-06 4.25e-06 1.13e-06 1.51e-06 1.8e-06 3.19e-06 2.87e-06 1.99e-06 3.26e-07 5.8e-07 1.35e-06 1.65e-06 1.03e-06 8.88e-07 4.2e-07 1.22e-06 3.98e-07 2.11e-07 3.88e-06 6.36e-07 1.99e-07 3.27e-07 3.88e-07 8.5e-07 1.95e-07 1.56e-07
ENSG00000116983 HPCAL4 -251569 1.28e-06 9.82e-07 3.04e-07 1.1e-06 3.43e-07 5.83e-07 1.53e-06 3.56e-07 1.48e-06 5.98e-07 1.84e-06 7.5e-07 2.31e-06 2.92e-07 5.34e-07 9.14e-07 9.01e-07 7.21e-07 8.83e-07 6.26e-07 7.16e-07 1.7e-06 8.98e-07 5.54e-07 2.21e-06 4.79e-07 9.18e-07 6.88e-07 1.48e-06 1.23e-06 6.63e-07 1.9e-07 2.42e-07 6.95e-07 5.49e-07 4.44e-07 5.61e-07 2.29e-07 4.99e-07 2.93e-07 2.83e-07 1.6e-06 1.24e-07 3.4e-08 2.5e-07 1.19e-07 2.17e-07 5.35e-08 1.46e-07
ENSG00000127603 MACF1 358600 1.22e-06 8.36e-07 1.59e-07 4.25e-07 1.16e-07 3.32e-07 7.32e-07 2.28e-07 7.15e-07 3.05e-07 1.07e-06 5.39e-07 1.15e-06 2.12e-07 4.15e-07 4.14e-07 6.29e-07 4.65e-07 3.48e-07 3.34e-07 2.41e-07 5.83e-07 5.41e-07 3.59e-07 1.42e-06 2.64e-07 4.9e-07 3.95e-07 6.47e-07 9.11e-07 4.08e-07 4.21e-08 9.36e-08 2.12e-07 3.35e-07 1.83e-07 1.83e-07 1.24e-07 1.11e-07 8.29e-09 1.21e-07 9.49e-07 7.37e-08 1.04e-08 1.89e-07 3.54e-08 1.43e-07 4.47e-08 5.47e-08
ENSG00000168653 \N 413598 1.05e-06 6.09e-07 1.31e-07 3.96e-07 1.18e-07 2.77e-07 6.02e-07 1.55e-07 4.61e-07 2.72e-07 7.67e-07 4.24e-07 8.37e-07 1.6e-07 2.96e-07 2.83e-07 3.75e-07 4.2e-07 2.57e-07 1.9e-07 2.09e-07 4.14e-07 3.87e-07 2.27e-07 8.99e-07 2.49e-07 3.16e-07 2.71e-07 4.13e-07 7.06e-07 3.13e-07 6.92e-08 5.39e-08 1.5e-07 3.34e-07 1.09e-07 1.06e-07 9.33e-08 7.45e-08 2.62e-08 1.02e-07 5.96e-07 4.71e-08 1.79e-08 1.61e-07 1.37e-08 1.3e-07 1.79e-08 6.06e-08
ENSG00000183682 BMP8A -51720 7.94e-06 9.27e-06 1.29e-06 4.36e-06 2.22e-06 3.91e-06 9.65e-06 1.49e-06 6.16e-06 4.28e-06 1.05e-05 4.74e-06 1.18e-05 4e-06 2.2e-06 5.78e-06 3.81e-06 5.6e-06 2.63e-06 2.59e-06 4.46e-06 7.85e-06 6.82e-06 3.3e-06 1.23e-05 3e-06 4.36e-06 2.82e-06 8.17e-06 7.97e-06 4.33e-06 6.32e-07 1.05e-06 2.93e-06 3.49e-06 2.05e-06 1.63e-06 1.56e-06 1.6e-06 1.03e-06 8.93e-07 1.07e-05 1.29e-06 1.54e-07 7.07e-07 1.32e-06 1.12e-06 7.32e-07 5.39e-07
ENSG00000213172 \N -924850 2.67e-07 1.3e-07 4.91e-08 1.82e-07 9.79e-08 9.91e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.54e-07 9.19e-08 1.45e-07 7.13e-08 6.12e-08 7.36e-08 4.17e-08 1.27e-07 5.97e-08 4.21e-08 1.19e-07 1.27e-07 1.44e-07 2.64e-08 1.46e-07 1.14e-07 1.07e-07 9.65e-08 1.12e-07 1.05e-07 9.7e-08 2.93e-08 3.66e-08 8.34e-08 7.51e-08 3.65e-08 4.95e-08 9.3e-08 6.59e-08 3.76e-08 4.69e-08 1.36e-07 5.2e-08 1.91e-08 3.84e-08 1.84e-08 1.18e-07 1.88e-09 5.02e-08
ENSG00000228477 AL663070.1 -522764 6.8e-07 2.67e-07 8.55e-08 2.53e-07 1.05e-07 1.57e-07 4.05e-07 7.79e-08 2.53e-07 1.6e-07 3.25e-07 2.33e-07 4.27e-07 9.18e-08 1.27e-07 1.39e-07 1.01e-07 2.9e-07 1.36e-07 8.41e-08 1.52e-07 2.45e-07 2.48e-07 1.04e-07 4.11e-07 1.9e-07 1.78e-07 1.68e-07 2.03e-07 3.15e-07 1.76e-07 8.02e-08 4.93e-08 1.15e-07 1.33e-07 5.05e-08 6.57e-08 5.8e-08 5.89e-08 8.3e-08 3.46e-08 2.74e-07 1.96e-08 7.2e-09 8.43e-08 8.94e-09 1.03e-07 2.85e-09 5.49e-08
ENSG00000237624 OXCT2P1 -75040 5.87e-06 5.76e-06 6.39e-07 3.39e-06 1.6e-06 1.93e-06 8.05e-06 1.1e-06 4.85e-06 2.86e-06 7.38e-06 2.97e-06 9.42e-06 2.15e-06 9.73e-07 3.99e-06 2.73e-06 3.8e-06 1.52e-06 1.55e-06 2.84e-06 5.5e-06 4.68e-06 2e-06 9.11e-06 2.1e-06 2.42e-06 1.75e-06 5.87e-06 6.65e-06 2.62e-06 4.02e-07 6.95e-07 2.26e-06 1.89e-06 1.11e-06 1.07e-06 4.5e-07 9.19e-07 6.06e-07 6.91e-07 7.97e-06 6.47e-07 1.55e-07 7.66e-07 1.13e-06 1.1e-06 7.35e-07 5.14e-07
ENSG00000243970 PPIEL -119755 4.33e-06 4.13e-06 6.67e-07 1.86e-06 8.67e-07 1.21e-06 3e-06 1.01e-06 2.75e-06 1.7e-06 3.95e-06 2.52e-06 6.3e-06 1.54e-06 1.2e-06 2.27e-06 1.87e-06 2.34e-06 1.45e-06 8.79e-07 1.97e-06 3.79e-06 3.45e-06 1.71e-06 4.77e-06 1.28e-06 1.92e-06 1.72e-06 3.85e-06 3.64e-06 2e-06 4.34e-07 7.5e-07 1.76e-06 1.88e-06 9.53e-07 9.07e-07 4.68e-07 1.32e-06 3.28e-07 2.66e-07 4.65e-06 4.64e-07 1.96e-07 4.13e-07 3.54e-07 7.1e-07 2.07e-07 1.78e-07