Genes within 1Mb (chr1:38537130:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 844881 sc-eQTL 1.70e-02 0.482 0.2 0.051 pDC L2
ENSG00000116954 RRAGC -322642 sc-eQTL 8.70e-01 0.031 0.19 0.051 pDC L2
ENSG00000127603 MACF1 -544186 sc-eQTL 2.29e-01 -0.263 0.218 0.051 pDC L2
ENSG00000134697 GNL2 941193 sc-eQTL 1.33e-02 -0.553 0.221 0.051 pDC L2
ENSG00000163877 SNIP1 982837 sc-eQTL 8.68e-01 0.0416 0.25 0.051 pDC L2
ENSG00000168653 NDUFS5 -489188 sc-eQTL 6.35e-01 0.0902 0.19 0.051 pDC L2
ENSG00000174574 AKIRIN1 -454146 sc-eQTL 5.57e-02 -0.391 0.203 0.051 pDC L2
ENSG00000183386 FHL3 531524 sc-eQTL 2.12e-01 0.226 0.181 0.051 pDC L2
ENSG00000183431 SF3A3 547055 sc-eQTL 7.70e-01 -0.0678 0.232 0.051 pDC L2
ENSG00000183520 UTP11 527872 sc-eQTL 6.69e-01 0.107 0.249 0.051 pDC L2
ENSG00000188786 MTF1 677538 sc-eQTL 6.35e-01 0.105 0.221 0.051 pDC L2
ENSG00000196449 YRDC 728922 sc-eQTL 1.26e-01 0.317 0.206 0.051 pDC L2
ENSG00000197982 C1orf122 730151 sc-eQTL 6.61e-01 -0.1 0.227 0.051 pDC L2
ENSG00000204084 INPP5B 590073 sc-eQTL 3.23e-02 0.462 0.214 0.051 pDC L2
ENSG00000214114 MYCBP -336238 sc-eQTL 3.31e-01 0.176 0.18 0.051 pDC L2
ENSG00000228436 AL139260.1 -322782 sc-eQTL 8.84e-01 -0.0321 0.22 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134697 GNL2 941193 eQTL 0.0221 0.11 0.0482 0.0 0.0 0.0393
ENSG00000204084 INPP5B 590073 eQTL 0.00319 0.249 0.0844 0.0 0.0 0.0393
ENSG00000228436 AL139260.1 -322870 eQTL 0.0503 0.204 0.104 0.00119 0.0 0.0393
ENSG00000230955 AL929472.2 676433 eQTL 0.00282 0.239 0.08 0.0 0.0 0.0393


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000183386 \N 531524 6.33e-07 2.5e-07 6.57e-08 2.61e-07 1.03e-07 1.5e-07 3.44e-07 7.56e-08 2.26e-07 1.39e-07 2.68e-07 2.11e-07 4.05e-07 8.85e-08 1.01e-07 1.14e-07 7.3e-08 2.66e-07 9.19e-08 7.54e-08 1.33e-07 2.07e-07 2.04e-07 7.22e-08 3.41e-07 1.82e-07 1.39e-07 1.46e-07 1.47e-07 2.1e-07 1.59e-07 6.58e-08 5.09e-08 1.02e-07 1.27e-07 4.77e-08 6.77e-08 5.8e-08 5.98e-08 7.65e-08 4.78e-08 2.41e-07 3.26e-08 1.44e-08 5.32e-08 8.59e-09 9.12e-08 0.0 4.54e-08
ENSG00000197982 \N 730151 3.07e-07 1.33e-07 4.91e-08 2.05e-07 9.87e-08 8.45e-08 1.81e-07 5.66e-08 1.5e-07 6.75e-08 1.73e-07 1.19e-07 1.79e-07 7.95e-08 5.82e-08 7.23e-08 4.24e-08 1.51e-07 6.92e-08 5.07e-08 1.22e-07 1.25e-07 1.5e-07 3.22e-08 1.68e-07 1.26e-07 1.18e-07 9.92e-08 1.22e-07 1.03e-07 1.08e-07 3.66e-08 3.59e-08 8.89e-08 3.81e-08 2.99e-08 5.35e-08 9.03e-08 6.39e-08 4.08e-08 5.04e-08 1.46e-07 5.08e-08 1.35e-08 3.81e-08 1.65e-08 1.15e-07 1.91e-09 4.8e-08
ENSG00000214114 \N -336238 1.34e-06 9.09e-07 1.48e-07 3.96e-07 1.11e-07 4.35e-07 8.96e-07 2.7e-07 8.61e-07 2.81e-07 1.11e-06 5.62e-07 1.48e-06 2.33e-07 4.34e-07 4.47e-07 6.67e-07 5.31e-07 3.79e-07 4.13e-07 2.41e-07 6.2e-07 5.67e-07 4.66e-07 1.59e-06 2.38e-07 5.24e-07 3.88e-07 6.84e-07 9.2e-07 4.61e-07 3.75e-08 1.28e-07 3.49e-07 3.42e-07 2.25e-07 2.83e-07 1.21e-07 1.5e-07 3.03e-08 3.17e-07 1.06e-06 7.37e-08 1.53e-08 1.87e-07 6.87e-08 1.68e-07 5.73e-08 5.26e-08
ENSG00000237624 \N -977826 2.74e-07 1.19e-07 3.56e-08 1.82e-07 9.21e-08 1e-07 1.44e-07 5.2e-08 1.44e-07 4.74e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 5.99e-08 7.17e-08 3.94e-08 1.21e-07 5.39e-08 4.04e-08 1.05e-07 1.23e-07 1.32e-07 3.42e-08 1.37e-07 1.16e-07 1.08e-07 9.32e-08 1.05e-07 1.1e-07 9.91e-08 3.64e-08 3.16e-08 8.55e-08 8.74e-08 3.93e-08 5.11e-08 9.23e-08 6.55e-08 4.02e-08 5.34e-08 1.33e-07 4.7e-08 1.95e-08 5.75e-08 1.83e-08 1.19e-07 3.86e-09 4.81e-08