logo

Genes within 1Mb (chr1:37607867:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 -84382 sc-eQTL 5.50e-01 -0.117 0.194 0.05 CD4_CTL L2
ENSG00000134697 GNL2 11930 sc-eQTL 4.40e-01 -0.15 0.194 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 4.86e-02 0.346 0.174 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 93093 sc-eQTL 1.02e-01 0.319 0.195 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 53574 sc-eQTL 3.22e-01 -0.188 0.19 0.05 CD4_CTL L2
ENSG00000183386 FHL3 -397739 sc-eQTL 4.40e-01 -0.14 0.181 0.05 CD4_CTL L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 7.03e-01 -0.071 0.186 0.05 CD4_CTL L2
ENSG00000183520 UTP11 -401391 sc-eQTL 8.24e-01 0.0415 0.186 0.05 CD4_CTL L2
ENSG00000188786 MTF1 -251725 sc-eQTL 8.04e-01 -0.0492 0.198 0.05 CD4_CTL L2
ENSG00000196449 YRDC -200341 sc-eQTL 6.45e-01 -0.0872 0.189 0.05 CD4_CTL L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 1.76e-01 -0.253 0.186 0.05 CD4_CTL L2
ENSG00000204084 INPP5B -339190 sc-eQTL 9.29e-02 0.331 0.196 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 133456 sc-eQTL 3.60e-02 0.382 0.181 0.05 CD4_CTL L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 6.53e-01 -0.0878 0.195 0.053 CD8_TCM L2
ENSG00000134697 GNL2 11930 sc-eQTL 9.02e-01 -0.0241 0.196 0.053 CD8_TCM L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 4.20e-01 -0.134 0.166 0.053 CD8_TCM L2
ENSG00000163875 MEAF6 93093 sc-eQTL 4.64e-01 0.129 0.176 0.053 CD8_TCM L2
ENSG00000163877 SNIP1 53574 sc-eQTL 8.86e-01 -0.0247 0.172 0.053 CD8_TCM L2
ENSG00000183386 FHL3 -397739 sc-eQTL 2.35e-01 -0.233 0.195 0.053 CD8_TCM L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 6.52e-01 -0.0801 0.177 0.053 CD8_TCM L2
ENSG00000183520 UTP11 -401391 sc-eQTL 3.85e-01 0.174 0.2 0.053 CD8_TCM L2
ENSG00000185090 MANEAL -185935 sc-eQTL 5.53e-01 -0.0966 0.163 0.053 CD8_TCM L2
ENSG00000185668 POU3F1 -438926 sc-eQTL 9.07e-01 -0.0212 0.181 0.053 CD8_TCM L2
ENSG00000188786 MTF1 -251725 sc-eQTL 6.87e-01 0.0842 0.209 0.053 CD8_TCM L2
ENSG00000196449 YRDC -200341 sc-eQTL 4.37e-01 0.134 0.173 0.053 CD8_TCM L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 1.42e-01 -0.272 0.184 0.053 CD8_TCM L2
ENSG00000204084 INPP5B -339190 sc-eQTL 7.57e-01 -0.0551 0.178 0.053 CD8_TCM L2
ENSG00000233621 LINC01137 133456 sc-eQTL 2.60e-01 0.216 0.192 0.053 CD8_TCM L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 2.41e-01 0.208 0.177 0.053 CD8_TEM L2
ENSG00000134697 GNL2 11930 sc-eQTL 9.39e-01 -0.015 0.197 0.053 CD8_TEM L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 3.62e-01 -0.135 0.147 0.053 CD8_TEM L2
ENSG00000163875 MEAF6 93093 sc-eQTL 3.80e-01 -0.144 0.164 0.053 CD8_TEM L2
ENSG00000163877 SNIP1 53574 sc-eQTL 2.87e-01 -0.192 0.18 0.053 CD8_TEM L2
ENSG00000183386 FHL3 -397739 sc-eQTL 6.90e-03 -0.523 0.191 0.053 CD8_TEM L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 6.72e-01 0.0861 0.203 0.053 CD8_TEM L2
ENSG00000183520 UTP11 -401391 sc-eQTL 8.02e-01 -0.0484 0.193 0.053 CD8_TEM L2
ENSG00000185090 MANEAL -185935 sc-eQTL 8.06e-01 0.0446 0.181 0.053 CD8_TEM L2
ENSG00000185668 POU3F1 -438926 sc-eQTL 2.67e-01 0.196 0.176 0.053 CD8_TEM L2
ENSG00000188786 MTF1 -251725 sc-eQTL 4.67e-01 0.142 0.195 0.053 CD8_TEM L2
ENSG00000196449 YRDC -200341 sc-eQTL 7.97e-01 -0.0486 0.189 0.053 CD8_TEM L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 3.95e-02 0.383 0.185 0.053 CD8_TEM L2
ENSG00000204084 INPP5B -339190 sc-eQTL 7.50e-01 0.0612 0.192 0.053 CD8_TEM L2
ENSG00000233621 LINC01137 133456 sc-eQTL 4.00e-02 0.378 0.183 0.053 CD8_TEM L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 8.04e-01 -0.0468 0.188 0.051 NK_CD56bright L2
ENSG00000134697 GNL2 11930 sc-eQTL 3.88e-01 -0.183 0.212 0.051 NK_CD56bright L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 5.38e-02 0.242 0.125 0.051 NK_CD56bright L2
ENSG00000163875 MEAF6 93093 sc-eQTL 9.52e-01 0.0114 0.19 0.051 NK_CD56bright L2
ENSG00000163877 SNIP1 53574 sc-eQTL 9.52e-01 -0.0105 0.173 0.051 NK_CD56bright L2
ENSG00000183386 FHL3 -397739 sc-eQTL 3.09e-02 -0.34 0.156 0.051 NK_CD56bright L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 9.39e-01 -0.0157 0.204 0.051 NK_CD56bright L2
ENSG00000183520 UTP11 -401391 sc-eQTL 8.69e-01 0.0343 0.207 0.051 NK_CD56bright L2
ENSG00000185090 MANEAL -185935 sc-eQTL 8.26e-01 0.0386 0.175 0.051 NK_CD56bright L2
ENSG00000188786 MTF1 -251725 sc-eQTL 3.76e-01 0.171 0.192 0.051 NK_CD56bright L2
ENSG00000196449 YRDC -200341 sc-eQTL 2.82e-01 0.177 0.165 0.051 NK_CD56bright L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 5.38e-01 -0.11 0.179 0.051 NK_CD56bright L2
ENSG00000204084 INPP5B -339190 sc-eQTL 5.86e-01 0.105 0.193 0.051 NK_CD56bright L2
ENSG00000233621 LINC01137 133456 sc-eQTL 7.33e-02 0.335 0.186 0.051 NK_CD56bright L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 7.68e-01 -0.0582 0.197 0.05 NK_HLA L2
ENSG00000134697 GNL2 11930 sc-eQTL 4.43e-01 -0.155 0.201 0.05 NK_HLA L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 7.09e-01 -0.0564 0.151 0.05 NK_HLA L2
ENSG00000163875 MEAF6 93093 sc-eQTL 9.84e-01 -0.00357 0.177 0.05 NK_HLA L2
ENSG00000163877 SNIP1 53574 sc-eQTL 7.07e-01 0.0723 0.192 0.05 NK_HLA L2
ENSG00000183386 FHL3 -397739 sc-eQTL 7.48e-01 0.0471 0.147 0.05 NK_HLA L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 2.56e-01 -0.227 0.2 0.05 NK_HLA L2
ENSG00000183520 UTP11 -401391 sc-eQTL 2.74e-01 0.221 0.201 0.05 NK_HLA L2
ENSG00000185090 MANEAL -185935 sc-eQTL 7.75e-01 0.0511 0.178 0.05 NK_HLA L2
ENSG00000188786 MTF1 -251725 sc-eQTL 9.33e-01 0.0166 0.197 0.05 NK_HLA L2
ENSG00000196449 YRDC -200341 sc-eQTL 4.01e-01 -0.148 0.176 0.05 NK_HLA L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 8.86e-01 -0.027 0.189 0.05 NK_HLA L2
ENSG00000204084 INPP5B -339190 sc-eQTL 8.87e-01 0.0278 0.195 0.05 NK_HLA L2
ENSG00000233621 LINC01137 133456 sc-eQTL 2.77e-01 0.213 0.195 0.05 NK_HLA L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 7.86e-01 0.061 0.224 0.059 PB L2
ENSG00000134697 GNL2 11930 sc-eQTL 2.33e-01 0.248 0.207 0.059 PB L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 5.12e-01 0.126 0.192 0.059 PB L2
ENSG00000163875 MEAF6 93093 sc-eQTL 5.81e-01 -0.112 0.203 0.059 PB L2
ENSG00000163877 SNIP1 53574 sc-eQTL 3.01e-03 0.608 0.2 0.059 PB L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 5.35e-01 0.122 0.196 0.059 PB L2
ENSG00000183520 UTP11 -401391 sc-eQTL 3.64e-01 0.131 0.143 0.059 PB L2
ENSG00000185090 MANEAL -185935 sc-eQTL 6.45e-01 0.101 0.218 0.059 PB L2
ENSG00000185668 POU3F1 -438926 sc-eQTL 9.42e-01 0.0151 0.208 0.059 PB L2
ENSG00000188786 MTF1 -251725 sc-eQTL 9.93e-02 0.364 0.219 0.059 PB L2
ENSG00000196449 YRDC -200341 sc-eQTL 4.46e-01 -0.177 0.231 0.059 PB L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 4.96e-01 0.1 0.147 0.059 PB L2
ENSG00000204084 INPP5B -339190 sc-eQTL 1.75e-01 -0.316 0.232 0.059 PB L2
ENSG00000238063 LINC01685 -866958 sc-eQTL 9.42e-01 0.0152 0.207 0.059 PB L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 9.31e-01 -0.017 0.195 0.05 Pro_T L2
ENSG00000134690 CDCA8 -84614 sc-eQTL 7.27e-01 0.0411 0.118 0.05 Pro_T L2
ENSG00000134697 GNL2 11930 sc-eQTL 5.46e-01 0.0952 0.158 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 2.54e-01 -0.163 0.143 0.05 Pro_T L2
ENSG00000163875 MEAF6 93093 sc-eQTL 2.36e-01 0.182 0.153 0.05 Pro_T L2
ENSG00000163877 SNIP1 53574 sc-eQTL 8.22e-01 0.0412 0.182 0.05 Pro_T L2
ENSG00000183386 FHL3 -397739 sc-eQTL 6.61e-01 -0.0661 0.15 0.05 Pro_T L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 9.44e-01 0.0117 0.168 0.05 Pro_T L2
ENSG00000183520 UTP11 -401391 sc-eQTL 8.82e-01 0.0214 0.144 0.05 Pro_T L2
ENSG00000185090 MANEAL -185935 sc-eQTL 3.86e-01 -0.149 0.171 0.05 Pro_T L2
ENSG00000185668 POU3F1 -438926 sc-eQTL 9.97e-01 0.000577 0.171 0.05 Pro_T L2
ENSG00000188786 MTF1 -251725 sc-eQTL 4.07e-01 0.163 0.196 0.05 Pro_T L2
ENSG00000196449 YRDC -200341 sc-eQTL 7.55e-01 -0.0547 0.175 0.05 Pro_T L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 5.74e-01 0.0909 0.161 0.05 Pro_T L2
ENSG00000204084 INPP5B -339190 sc-eQTL 2.24e-01 -0.235 0.193 0.05 Pro_T L2
ENSG00000233621 LINC01137 133456 sc-eQTL 5.36e-01 0.11 0.178 0.05 Pro_T L2
ENSG00000116922 C1orf109 -84382 sc-eQTL 2.51e-01 -0.244 0.211 0.064 gdT L2
ENSG00000134690 CDCA8 -84614 sc-eQTL 7.02e-01 -0.0701 0.183 0.064 gdT L2
ENSG00000134697 GNL2 11930 sc-eQTL 5.67e-01 -0.128 0.224 0.064 gdT L2
ENSG00000163874 ZC3H12A 133287 sc-eQTL 8.84e-01 -0.0229 0.157 0.064 gdT L2
ENSG00000163875 MEAF6 93093 sc-eQTL 6.21e-02 0.374 0.199 0.064 gdT L2
ENSG00000163877 SNIP1 53574 sc-eQTL 8.05e-01 -0.0509 0.206 0.064 gdT L2
ENSG00000183386 FHL3 -397739 sc-eQTL 6.77e-01 -0.0815 0.196 0.064 gdT L2
ENSG00000183431 SF3A3 -382208 sc-eQTL 4.87e-01 0.151 0.216 0.064 gdT L2
ENSG00000183520 UTP11 -401391 sc-eQTL 6.40e-01 -0.106 0.226 0.064 gdT L2
ENSG00000185090 MANEAL -185935 sc-eQTL 2.07e-01 0.227 0.179 0.064 gdT L2
ENSG00000185668 POU3F1 -438926 sc-eQTL 6.94e-01 0.0739 0.187 0.064 gdT L2
ENSG00000188786 MTF1 -251725 sc-eQTL 7.71e-01 0.0632 0.216 0.064 gdT L2
ENSG00000196449 YRDC -200341 sc-eQTL 6.57e-01 -0.0821 0.184 0.064 gdT L2
ENSG00000197982 C1orf122 -199112 sc-eQTL 3.17e-01 -0.192 0.191 0.064 gdT L2
ENSG00000204084 INPP5B -339190 sc-eQTL 4.11e-01 -0.168 0.204 0.064 gdT L2
ENSG00000233621 LINC01137 133456 sc-eQTL 5.87e-01 0.103 0.189 0.064 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163874 ZC3H12A 133287 eQTL 0.0244 0.0566 0.0251 0.00131 0.0 0.0402
ENSG00000163877 SNIP1 53574 eQTL 0.0429 -0.0845 0.0417 0.0 0.0 0.0402
ENSG00000183386 FHL3 -397739 eQTL 4.07e-05 -0.33 0.0801 0.0 0.0 0.0402
ENSG00000183431 SF3A3 -382208 eQTL 0.00229 -0.229 0.0748 0.0 0.0 0.0402
ENSG00000196449 YRDC -200341 eQTL 0.0154 -0.112 0.0462 0.00233 0.0 0.0402
ENSG00000197982 C1orf122 -199112 eQTL 1.82e-02 0.102 0.0432 0.0 0.0 0.0402
ENSG00000204084 INPP5B -339190 eQTL 0.000321 0.302 0.0836 0.0 0.0 0.0402
ENSG00000230955 AL929472.2 -252830 eQTL 0.0233 0.181 0.0795 0.0 0.0 0.0402
ENSG00000233621 LINC01137 133456 eQTL 1.23e-08 0.31 0.054 0.0 0.0 0.0402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116922 \N -84382 5.62e-06 6.3e-06 9.8e-07 3.81e-06 2.18e-06 2.1e-06 9e-06 1.58e-06 5.38e-06 3.57e-06 8.1e-06 3.3e-06 1.09e-05 2.68e-06 1.55e-06 5.31e-06 3.09e-06 3.94e-06 2.27e-06 2.62e-06 3.64e-06 7.45e-06 5.59e-06 2.98e-06 9.65e-06 2.79e-06 3.87e-06 2.5e-06 7.12e-06 7.79e-06 3.43e-06 7.97e-07 1.18e-06 2.99e-06 2.47e-06 2.15e-06 1.72e-06 1.35e-06 1.57e-06 1e-06 1.1e-06 8.25e-06 6.85e-07 2.07e-07 7.14e-07 1.13e-06 9.55e-07 7.2e-07 4.28e-07
ENSG00000204084 INPP5B -339190 1.27e-06 9.09e-07 2.88e-07 3.6e-07 2.79e-07 4.02e-07 1.07e-06 3.46e-07 1.15e-06 3.66e-07 1.35e-06 6.19e-07 1.59e-06 2.54e-07 4.42e-07 7.78e-07 7.96e-07 5.75e-07 4.7e-07 5.62e-07 3.61e-07 1.04e-06 7.79e-07 5.84e-07 1.92e-06 3.71e-07 6.75e-07 6e-07 1.02e-06 1e-06 5.3e-07 4.91e-08 1.94e-07 5.28e-07 3.81e-07 3.94e-07 3.62e-07 1.38e-07 1.94e-07 9.07e-08 2.98e-07 1.34e-06 6.17e-08 1.24e-08 1.62e-07 7.29e-08 1.7e-07 8.16e-08 8.44e-08
ENSG00000233621 LINC01137 133456 4.24e-06 4.34e-06 8.72e-07 2.32e-06 1.59e-06 1.19e-06 3.48e-06 9.79e-07 4.76e-06 2.07e-06 4.22e-06 3.37e-06 7.42e-06 1.91e-06 1.35e-06 3.42e-06 2.06e-06 3.23e-06 1.45e-06 1.16e-06 3e-06 4.6e-06 3.54e-06 1.39e-06 5.16e-06 1.81e-06 2.59e-06 1.75e-06 4.28e-06 4.04e-06 2.19e-06 5.41e-07 4.86e-07 1.62e-06 2.06e-06 1.16e-06 9.91e-07 4.94e-07 8.13e-07 5.03e-07 8.05e-07 5.14e-06 3.77e-07 1.54e-07 5.94e-07 6.22e-07 9.63e-07 4.11e-07 4.68e-07