Genes within 1Mb (chr1:31912602:CA:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060688 SNRNP40 615814 eQTL 1.45e-02 -0.0491 0.02 0.00136 0.0 0.211
ENSG00000121766 ZCCHC17 615620 eQTL 6.63e-04 -0.0717 0.021 0.0 0.0 0.211
ENSG00000142910 TINAGL1 336117 pQTL 7.33e-03 0.0503 0.0187 0.00213 0.00102 0.201
ENSG00000160097 FNDC5 -959880 eQTL 4.97e-02 0.0919 0.0468 0.00119 0.0 0.211
ENSG00000162520 SYNC -790994 eQTL 2.20e-02 0.0849 0.037 0.0 0.0 0.211
ENSG00000162522 KIAA1522 -829228 eQTL 9.80e-05 0.137 0.0349 0.0 0.0 0.211
ENSG00000168528 SERINC2 503037 eQTL 1.38e-02 0.113 0.0458 0.0 0.0 0.211
ENSG00000184007 PTP4A2 -32254 eQTL 8.43e-04 0.0471 0.0141 0.00224 0.00146 0.211
ENSG00000220785 MTMR9LP -329018 eQTL 1.84e-04 -0.176 0.047 0.0 0.0 0.211
ENSG00000228634 AL136115.1 -20418 eQTL 7.62e-02 -0.0732 0.0412 0.00102 0.0 0.211
ENSG00000237329 AL356320.2 875868 eQTL 2.34e-02 -0.094 0.0414 0.00141 0.0 0.211


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121766 ZCCHC17 615620 5.66e-06 6.26e-06 9.68e-07 3.52e-06 1.18e-06 1.62e-06 7.23e-06 4.44e-07 5.18e-06 1.37e-06 6.49e-06 3.39e-06 9.33e-06 1.24e-06 9.89e-07 2.42e-06 1.99e-06 2.76e-06 6.68e-07 1.13e-06 2.28e-06 4.87e-06 4.21e-06 1.07e-06 6.37e-06 1.33e-06 1.46e-06 1.7e-06 4.19e-06 4.14e-06 2.28e-06 4.91e-08 4.61e-07 1.69e-06 1.73e-06 9.97e-07 6.87e-07 3.93e-07 1.37e-06 8.86e-07 3.5e-07 1.6e-05 1.4e-06 1.54e-07 3.64e-07 3.21e-07 6.93e-07 8.19e-08 1.6e-07
ENSG00000134684 \N -905551 4.41e-06 3.66e-06 6.93e-07 2.02e-06 4.85e-07 7.41e-07 2.43e-06 3.27e-07 1.89e-06 7.04e-07 2.98e-06 1.29e-06 6.3e-06 7.09e-07 3.28e-07 1.17e-06 1.49e-06 1.7e-06 8.13e-07 6.52e-07 9.18e-07 2.99e-06 2.32e-06 5.57e-07 4.03e-06 9.84e-07 1.05e-06 9.33e-07 2.1e-06 1.9e-06 1.38e-06 7.5e-08 2.19e-07 1.83e-06 9.17e-07 8.48e-07 4.79e-07 3.68e-07 5e-07 3.4e-07 2.19e-07 8.1e-06 6.63e-07 1.89e-07 2.83e-07 3.36e-07 2.22e-07 8.16e-08 6.51e-08
ENSG00000160097 FNDC5 -959880 4.39e-06 3.14e-06 5.8e-07 1.94e-06 4.46e-07 7.88e-07 2.43e-06 3.02e-07 1.82e-06 6.94e-07 2.49e-06 1.42e-06 5.37e-06 4.89e-07 4.03e-07 1.04e-06 1.17e-06 1.36e-06 6.68e-07 6.79e-07 7.69e-07 2.8e-06 2.02e-06 6.31e-07 3.46e-06 8.03e-07 9.37e-07 8.66e-07 1.86e-06 1.64e-06 9.97e-07 7.71e-08 2.14e-07 1.59e-06 8.29e-07 7.08e-07 4.21e-07 2.97e-07 5.05e-07 3.63e-07 1.93e-07 8.15e-06 5.26e-07 1.99e-07 2.5e-07 3.02e-07 1.93e-07 4.41e-08 5.25e-08
ENSG00000162522 KIAA1522 -829228 4.65e-06 4.65e-06 8.72e-07 2.14e-06 4.71e-07 9.87e-07 2.91e-06 3.34e-07 2.35e-06 7.58e-07 3.71e-06 1.44e-06 7.2e-06 1.01e-06 5.01e-07 1.45e-06 1.56e-06 2.29e-06 8.3e-07 5.08e-07 1.14e-06 3.41e-06 2.62e-06 5.76e-07 4.32e-06 1.21e-06 1.01e-06 1.05e-06 2.68e-06 2.24e-06 1.89e-06 6.77e-08 3e-07 1.76e-06 9.03e-07 1.01e-06 5.04e-07 3.52e-07 6.78e-07 4.89e-07 3e-07 9.36e-06 7.84e-07 1.6e-07 3.55e-07 3.63e-07 2.18e-07 8.74e-08 8.28e-08
ENSG00000183615 \N -334620 1.21e-05 1.26e-05 2.27e-06 6.04e-06 1.83e-06 4e-06 1.28e-05 1e-06 8.59e-06 3.05e-06 1.24e-05 4.64e-06 1.8e-05 2.33e-06 1.52e-06 5.31e-06 5.55e-06 5.81e-06 1.47e-06 1.01e-06 3.46e-06 9e-06 7.62e-06 1.35e-06 1.29e-05 2.92e-06 2.64e-06 1.71e-06 9.09e-06 7.98e-06 4.53e-06 2.42e-07 5.05e-07 2.76e-06 1.99e-06 1.71e-06 9.08e-07 4.57e-07 9.5e-07 1.42e-06 3.06e-07 3.89e-05 2.46e-06 2.8e-07 7.41e-07 9.54e-07 9.63e-07 1.82e-07 2.27e-07
ENSG00000184007 PTP4A2 -32254 4.21e-05 3.34e-05 5.06e-06 1.31e-05 4.03e-06 1.12e-05 5.17e-05 2.9e-06 2.67e-05 9.72e-06 3.59e-05 1.14e-05 5.31e-05 9.29e-06 5.59e-06 1.32e-05 1.47e-05 2.46e-05 4.61e-06 4.75e-06 1.15e-05 2.92e-05 3.3e-05 5.33e-06 3.43e-05 5.99e-06 9.55e-06 9.13e-06 3.65e-05 2.47e-05 1.53e-05 1.03e-06 1.93e-06 5.45e-06 9.85e-06 4.5e-06 1.79e-06 2.7e-06 3.09e-06 3.6e-06 1.63e-06 5.78e-05 3.47e-06 2.73e-07 1.95e-06 2.97e-06 3.8e-06 7.25e-07 8.23e-07
ENSG00000220785 MTMR9LP -329018 1.25e-05 1.25e-05 2.32e-06 6.07e-06 1.82e-06 4.14e-06 1.33e-05 1.01e-06 8.81e-06 3.09e-06 1.23e-05 4.77e-06 1.8e-05 2.37e-06 1.58e-06 5.49e-06 5.51e-06 5.96e-06 1.5e-06 1e-06 3.51e-06 9.11e-06 7.69e-06 1.42e-06 1.3e-05 3.09e-06 2.68e-06 1.67e-06 9.48e-06 7.9e-06 4.6e-06 2.44e-07 5.4e-07 2.79e-06 1.99e-06 1.7e-06 9.09e-07 4.39e-07 9.13e-07 1.41e-06 3.2e-07 3.94e-05 2.47e-06 2.81e-07 7.55e-07 9.48e-07 8.82e-07 1.83e-07 2.41e-07
ENSG00000228634 AL136115.1 -20418 5.89e-05 4.02e-05 6.39e-06 1.47e-05 5.6e-06 1.52e-05 5.68e-05 3.72e-06 3.43e-05 1.27e-05 4.51e-05 1.67e-05 6.01e-05 1.38e-05 6.5e-06 1.88e-05 1.86e-05 3e-05 6.91e-06 6.18e-06 1.5e-05 3.78e-05 3.86e-05 7.57e-06 4.3e-05 7.23e-06 1.38e-05 1.15e-05 4.2e-05 2.95e-05 2.17e-05 1.61e-06 2.24e-06 6.29e-06 1.19e-05 4.81e-06 2.37e-06 2.99e-06 3.6e-06 3.36e-06 1.63e-06 6.17e-05 4.52e-06 2.73e-07 2.32e-06 3.54e-06 4.13e-06 1.22e-06 1.37e-06
ENSG00000237329 AL356320.2 875868 4.39e-06 3.85e-06 7.62e-07 1.86e-06 4.37e-07 8.42e-07 2.37e-06 3.26e-07 2.17e-06 7.41e-07 3.25e-06 1.34e-06 6.47e-06 8.9e-07 4e-07 1.18e-06 1.54e-06 1.99e-06 8.18e-07 6.26e-07 1.07e-06 3e-06 2.46e-06 5.47e-07 4.21e-06 1.1e-06 1.03e-06 9.91e-07 2.28e-06 1.83e-06 1.67e-06 6.2e-08 2.42e-07 1.7e-06 8.99e-07 9.48e-07 5.17e-07 3.37e-07 4.83e-07 4.27e-07 2.86e-07 8.14e-06 6.91e-07 1.96e-07 2.85e-07 3.06e-07 2.33e-07 8.66e-08 8.28e-08
ENSG00000269967 \N -9239 9.22e-05 5.98e-05 8.97e-06 1.72e-05 7.94e-06 2.24e-05 7.73e-05 6.19e-06 4.97e-05 1.89e-05 7.36e-05 2.63e-05 8.55e-05 2.49e-05 1.06e-05 3.38e-05 3.23e-05 4.16e-05 1.21e-05 8.59e-06 2.44e-05 5.95e-05 5.54e-05 1.24e-05 6.47e-05 1.29e-05 2.16e-05 1.73e-05 5.97e-05 4.34e-05 3.65e-05 2.13e-06 3.87e-06 8.44e-06 1.59e-05 7.7e-06 3.68e-06 3.5e-06 5.89e-06 3.75e-06 1.82e-06 8.72e-05 6.45e-06 4.37e-07 3.92e-06 5.2e-06 5.05e-06 1.75e-06 1.45e-06