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Genes within 1Mb (chr1:31787503:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -320553 sc-eQTL 7.32e-01 0.0768 0.224 0.054 B_Activated L2
ENSG00000060688 SNRNP40 490715 sc-eQTL 7.66e-01 -0.0654 0.22 0.054 B_Activated L2
ENSG00000084623 EIF3I -434425 sc-eQTL 5.46e-01 0.127 0.211 0.054 B_Activated L2
ENSG00000084652 TXLNA -392172 sc-eQTL 3.12e-01 0.213 0.21 0.054 B_Activated L2
ENSG00000116478 HDAC1 -504580 sc-eQTL 5.66e-01 -0.115 0.2 0.054 B_Activated L2
ENSG00000121766 ZCCHC17 490521 sc-eQTL 1.36e-01 -0.33 0.22 0.054 B_Activated L2
ENSG00000121774 KHDRBS1 -226365 sc-eQTL 5.39e-01 0.123 0.2 0.054 B_Activated L2
ENSG00000121775 TMEM39B -284528 sc-eQTL 9.07e-01 0.0245 0.21 0.054 B_Activated L2
ENSG00000134644 PUM1 721512 sc-eQTL 9.26e-02 -0.346 0.204 0.054 B_Activated L2
ENSG00000160050 CCDC28B -412883 sc-eQTL 1.58e-01 0.266 0.187 0.054 B_Activated L2
ENSG00000160055 TMEM234 -434856 sc-eQTL 7.12e-01 -0.0766 0.207 0.054 B_Activated L2
ENSG00000160058 BSDC1 -607228 sc-eQTL 1.61e-02 -0.537 0.221 0.054 B_Activated L2
ENSG00000162517 PEF1 142607 sc-eQTL 6.64e-01 -0.093 0.214 0.054 B_Activated L2
ENSG00000162520 SYNC -916093 sc-eQTL 4.36e-01 0.172 0.22 0.054 B_Activated L2
ENSG00000162521 RBBP4 -863639 sc-eQTL 1.47e-01 0.309 0.212 0.054 B_Activated L2
ENSG00000175130 MARCKSL1 -548730 sc-eQTL 4.31e-01 0.154 0.195 0.054 B_Activated L2
ENSG00000176261 ZBTB8OS -863400 sc-eQTL 3.01e-01 0.209 0.202 0.054 B_Activated L2
ENSG00000182866 LCK -463736 sc-eQTL 8.24e-01 -0.0327 0.147 0.054 B_Activated L2
ENSG00000184007 PTP4A2 -157353 sc-eQTL 6.61e-01 0.0681 0.155 0.054 B_Activated L2
ENSG00000025800 KPNA6 -320553 sc-eQTL 7.58e-01 0.0662 0.215 0.05 CD4_CTL L2
ENSG00000060688 SNRNP40 490715 sc-eQTL 9.26e-01 0.0187 0.202 0.05 CD4_CTL L2
ENSG00000084623 EIF3I -434425 sc-eQTL 3.50e-02 0.383 0.18 0.05 CD4_CTL L2
ENSG00000084652 TXLNA -392172 sc-eQTL 3.67e-01 0.174 0.193 0.05 CD4_CTL L2
ENSG00000116478 HDAC1 -504580 sc-eQTL 3.74e-02 -0.392 0.187 0.05 CD4_CTL L2
ENSG00000121766 ZCCHC17 490521 sc-eQTL 3.91e-01 0.17 0.198 0.05 CD4_CTL L2
ENSG00000121774 KHDRBS1 -226365 sc-eQTL 9.47e-01 -0.011 0.166 0.05 CD4_CTL L2
ENSG00000121775 TMEM39B -284528 sc-eQTL 7.44e-02 -0.364 0.203 0.05 CD4_CTL L2
ENSG00000134644 PUM1 721512 sc-eQTL 9.47e-01 0.0129 0.194 0.05 CD4_CTL L2
ENSG00000160050 CCDC28B -412883 sc-eQTL 4.23e-01 0.155 0.193 0.05 CD4_CTL L2
ENSG00000160055 TMEM234 -434856 sc-eQTL 8.59e-01 -0.0372 0.208 0.05 CD4_CTL L2
ENSG00000160058 BSDC1 -607228 sc-eQTL 5.40e-01 -0.123 0.2 0.05 CD4_CTL L2
ENSG00000162517 PEF1 142607 sc-eQTL 8.00e-01 0.0451 0.178 0.05 CD4_CTL L2
ENSG00000162520 SYNC -916093 sc-eQTL 8.93e-01 -0.0278 0.206 0.05 CD4_CTL L2
ENSG00000162521 RBBP4 -863639 sc-eQTL 9.18e-01 0.0191 0.186 0.05 CD4_CTL L2
ENSG00000175130 MARCKSL1 -548730 sc-eQTL 9.03e-01 0.0238 0.196 0.05 CD4_CTL L2
ENSG00000176261 ZBTB8OS -863400 sc-eQTL 3.55e-01 -0.184 0.198 0.05 CD4_CTL L2
ENSG00000182866 LCK -463736 sc-eQTL 9.69e-01 0.00535 0.137 0.05 CD4_CTL L2
ENSG00000184007 PTP4A2 -157353 sc-eQTL 5.29e-01 0.0693 0.11 0.05 CD4_CTL L2
ENSG00000225828 FAM229A -576775 sc-eQTL 2.69e-01 0.202 0.182 0.05 CD4_CTL L2
ENSG00000025800 KPNA6 -320553 sc-eQTL 3.61e-02 -0.419 0.199 0.051 CD8_TCM L2
ENSG00000060688 SNRNP40 490715 sc-eQTL 6.95e-01 -0.0874 0.222 0.051 CD8_TCM L2
ENSG00000084623 EIF3I -434425 sc-eQTL 7.81e-02 -0.369 0.208 0.051 CD8_TCM L2
ENSG00000084652 TXLNA -392172 sc-eQTL 1.69e-01 -0.268 0.194 0.051 CD8_TCM L2
ENSG00000116478 HDAC1 -504580 sc-eQTL 8.93e-01 -0.0227 0.169 0.051 CD8_TCM L2
ENSG00000121766 ZCCHC17 490521 sc-eQTL 7.82e-01 -0.0566 0.204 0.051 CD8_TCM L2
ENSG00000121774 KHDRBS1 -226365 sc-eQTL 9.18e-01 0.0167 0.162 0.051 CD8_TCM L2
ENSG00000121775 TMEM39B -284528 sc-eQTL 8.78e-01 0.0304 0.198 0.051 CD8_TCM L2
ENSG00000134644 PUM1 721512 sc-eQTL 5.32e-01 -0.12 0.192 0.051 CD8_TCM L2
ENSG00000160050 CCDC28B -412883 sc-eQTL 1.03e-01 -0.316 0.193 0.051 CD8_TCM L2
ENSG00000160055 TMEM234 -434856 sc-eQTL 4.85e-01 0.144 0.206 0.051 CD8_TCM L2
ENSG00000160058 BSDC1 -607228 sc-eQTL 2.03e-01 -0.242 0.189 0.051 CD8_TCM L2
ENSG00000162517 PEF1 142607 sc-eQTL 8.43e-01 0.0406 0.205 0.051 CD8_TCM L2
ENSG00000162520 SYNC -916093 sc-eQTL 3.76e-01 -0.165 0.186 0.051 CD8_TCM L2
ENSG00000162521 RBBP4 -863639 sc-eQTL 7.90e-01 -0.049 0.184 0.051 CD8_TCM L2
ENSG00000175130 MARCKSL1 -548730 sc-eQTL 2.55e-01 -0.197 0.173 0.051 CD8_TCM L2
ENSG00000176261 ZBTB8OS -863400 sc-eQTL 6.48e-01 0.0928 0.203 0.051 CD8_TCM L2
ENSG00000182866 LCK -463736 sc-eQTL 1.53e-01 0.162 0.113 0.051 CD8_TCM L2
ENSG00000184007 PTP4A2 -157353 sc-eQTL 4.96e-02 0.323 0.163 0.051 CD8_TCM L2
ENSG00000025800 KPNA6 -320553 sc-eQTL 3.99e-01 0.176 0.208 0.053 CD8_TEM L2
ENSG00000060688 SNRNP40 490715 sc-eQTL 2.12e-01 -0.251 0.201 0.053 CD8_TEM L2
ENSG00000084623 EIF3I -434425 sc-eQTL 6.60e-01 0.0808 0.184 0.053 CD8_TEM L2
ENSG00000084652 TXLNA -392172 sc-eQTL 3.36e-01 0.178 0.184 0.053 CD8_TEM L2
ENSG00000116478 HDAC1 -504580 sc-eQTL 1.79e-01 -0.242 0.179 0.053 CD8_TEM L2
ENSG00000121766 ZCCHC17 490521 sc-eQTL 3.90e-01 0.166 0.193 0.053 CD8_TEM L2
ENSG00000121774 KHDRBS1 -226365 sc-eQTL 3.23e-01 -0.175 0.176 0.053 CD8_TEM L2
ENSG00000121775 TMEM39B -284528 sc-eQTL 1.26e-01 0.296 0.192 0.053 CD8_TEM L2
ENSG00000134644 PUM1 721512 sc-eQTL 8.57e-01 0.0355 0.198 0.053 CD8_TEM L2
ENSG00000160050 CCDC28B -412883 sc-eQTL 8.02e-01 -0.044 0.176 0.053 CD8_TEM L2
ENSG00000160055 TMEM234 -434856 sc-eQTL 9.43e-01 0.0142 0.197 0.053 CD8_TEM L2
ENSG00000160058 BSDC1 -607228 sc-eQTL 3.16e-01 -0.205 0.204 0.053 CD8_TEM L2
ENSG00000162517 PEF1 142607 sc-eQTL 2.09e-01 -0.219 0.174 0.053 CD8_TEM L2
ENSG00000162520 SYNC -916093 sc-eQTL 5.98e-01 -0.103 0.195 0.053 CD8_TEM L2
ENSG00000162521 RBBP4 -863639 sc-eQTL 9.09e-01 0.02 0.175 0.053 CD8_TEM L2
ENSG00000175130 MARCKSL1 -548730 sc-eQTL 3.84e-01 -0.136 0.156 0.053 CD8_TEM L2
ENSG00000176261 ZBTB8OS -863400 sc-eQTL 4.40e-01 0.139 0.179 0.053 CD8_TEM L2
ENSG00000182866 LCK -463736 sc-eQTL 3.98e-01 -0.0822 0.097 0.053 CD8_TEM L2
ENSG00000184007 PTP4A2 -157353 sc-eQTL 1.14e-03 -0.494 0.149 0.053 CD8_TEM L2
ENSG00000025800 KPNA6 -320553 sc-eQTL 3.94e-01 0.193 0.226 0.056 PB L2
ENSG00000060688 SNRNP40 490715 sc-eQTL 9.14e-02 -0.347 0.204 0.056 PB L2
ENSG00000084623 EIF3I -434425 sc-eQTL 7.87e-01 0.0361 0.133 0.056 PB L2
ENSG00000084652 TXLNA -392172 sc-eQTL 1.60e-01 0.248 0.175 0.056 PB L2
ENSG00000116478 HDAC1 -504580 sc-eQTL 4.75e-01 -0.147 0.205 0.056 PB L2
ENSG00000121766 ZCCHC17 490521 sc-eQTL 5.33e-01 -0.149 0.239 0.056 PB L2
ENSG00000121774 KHDRBS1 -226365 sc-eQTL 8.00e-01 -0.0468 0.185 0.056 PB L2
ENSG00000121775 TMEM39B -284528 sc-eQTL 8.56e-01 0.0387 0.213 0.056 PB L2
ENSG00000134644 PUM1 721512 sc-eQTL 1.26e-01 -0.317 0.206 0.056 PB L2
ENSG00000160050 CCDC28B -412883 sc-eQTL 4.47e-01 -0.154 0.202 0.056 PB L2
ENSG00000160055 TMEM234 -434856 sc-eQTL 6.08e-01 0.12 0.233 0.056 PB L2
ENSG00000160058 BSDC1 -607228 sc-eQTL 5.59e-01 0.149 0.254 0.056 PB L2
ENSG00000162517 PEF1 142607 sc-eQTL 8.16e-01 0.0498 0.213 0.056 PB L2
ENSG00000162520 SYNC -916093 sc-eQTL 5.81e-02 -0.347 0.181 0.056 PB L2
ENSG00000162521 RBBP4 -863639 sc-eQTL 7.05e-01 -0.0615 0.162 0.056 PB L2
ENSG00000175130 MARCKSL1 -548730 sc-eQTL 8.08e-01 -0.0408 0.168 0.056 PB L2
ENSG00000176261 ZBTB8OS -863400 sc-eQTL 1.45e-01 -0.197 0.134 0.056 PB L2
ENSG00000182866 LCK -463736 sc-eQTL 5.69e-01 0.12 0.21 0.056 PB L2
ENSG00000184007 PTP4A2 -157353 sc-eQTL 3.07e-01 0.148 0.144 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000121753 ADGRB2 22610 eQTL 6.76e-03 -0.144 0.0532 0.00305 0.0013 0.0353
ENSG00000162512 SDC3 878745 eQTL 0.00115 -0.212 0.0651 0.0 0.0 0.0353
ENSG00000162520 SYNC -916093 eQTL 0.0534 0.16 0.0828 0.00239 0.0 0.0353

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084652 \N -392172 1.29e-06 1e-06 3.45e-07 7.39e-07 3.57e-07 6.31e-07 1.45e-06 3.52e-07 1.24e-06 4.24e-07 1.41e-06 6.01e-07 1.99e-06 2.73e-07 5.22e-07 7.78e-07 7.94e-07 6.1e-07 8.13e-07 6.55e-07 4.48e-07 1.17e-06 8.95e-07 6.25e-07 2.16e-06 3.91e-07 7.97e-07 7.27e-07 1.15e-06 1.13e-06 6.04e-07 1.59e-07 2.43e-07 7.03e-07 5.61e-07 3.59e-07 5.15e-07 2.04e-07 2.92e-07 8.98e-08 1.2e-07 1.59e-06 1.1e-07 1.41e-07 1.72e-07 1.37e-07 2.22e-07 8.73e-08 8e-08
ENSG00000121753 ADGRB2 22610 2.06e-05 2.43e-05 3.2e-06 1.24e-05 3.33e-06 9.27e-06 2.8e-05 3.47e-06 1.85e-05 9.88e-06 2.52e-05 1.01e-05 3.42e-05 8.97e-06 5.8e-06 1.11e-05 1.02e-05 1.56e-05 5.66e-06 4.51e-06 8.81e-06 2.06e-05 2.11e-05 5.93e-06 3.04e-05 5.58e-06 8.33e-06 8.42e-06 2.1e-05 1.77e-05 1.29e-05 1.22e-06 1.73e-06 5.34e-06 8.64e-06 4.06e-06 1.95e-06 2.71e-06 3.24e-06 2.42e-06 1.25e-06 2.65e-05 2.7e-06 2.27e-07 1.43e-06 2.81e-06 3.37e-06 1.26e-06 8.91e-07
ENSG00000121774 \N -226365 4.02e-06 3.85e-06 4.65e-07 1.99e-06 7.62e-07 9.88e-07 2.48e-06 8.31e-07 2.08e-06 1.2e-06 3.01e-06 1.71e-06 3.96e-06 1.36e-06 1.03e-06 1.68e-06 1.54e-06 2.19e-06 1.5e-06 1.41e-06 1.21e-06 3.09e-06 2.71e-06 1.17e-06 4.25e-06 1.16e-06 1.44e-06 1.81e-06 2.66e-06 2.11e-06 2.02e-06 3.23e-07 5.05e-07 1.33e-06 1.63e-06 8.65e-07 7.91e-07 4.2e-07 1.12e-06 3.97e-07 3.54e-07 4.09e-06 5.97e-07 1.8e-07 3.67e-07 3.6e-07 8.12e-07 2.45e-07 2.46e-07
ENSG00000162512 SDC3 878745 3.14e-07 1.56e-07 6.55e-08 2.2e-07 1.05e-07 7.75e-08 2.1e-07 5.85e-08 1.54e-07 8.53e-08 1.62e-07 1.2e-07 2.13e-07 8.07e-08 5.62e-08 7.98e-08 4.45e-08 1.77e-07 7.29e-08 5.61e-08 1.22e-07 1.39e-07 1.62e-07 3.58e-08 2.09e-07 1.26e-07 1.2e-07 1.1e-07 1.31e-07 1.07e-07 1.14e-07 4.93e-08 3.38e-08 9.52e-08 3.36e-08 2.68e-08 4.62e-08 7.92e-08 6.5e-08 3.67e-08 5.24e-08 1.5e-07 3.18e-08 1.85e-08 3.07e-08 6.83e-09 8.61e-08 2.02e-09 4.81e-08
ENSG00000224066 \N -419311 1.31e-06 9.83e-07 3.22e-07 5.17e-07 2.79e-07 5.15e-07 1.18e-06 3.45e-07 1.13e-06 3.82e-07 1.35e-06 5.86e-07 1.62e-06 2.54e-07 4.91e-07 6.35e-07 7.74e-07 5.69e-07 6.18e-07 6.91e-07 3.61e-07 9.57e-07 7.79e-07 5.1e-07 1.95e-06 2.99e-07 6.88e-07 6.46e-07 9.32e-07 1e-06 5.66e-07 9.48e-08 1.79e-07 5.18e-07 4.22e-07 2.91e-07 4.26e-07 1.58e-07 1.71e-07 4.07e-08 1.02e-07 1.34e-06 6.13e-08 1.38e-07 1.85e-07 1.34e-07 1.93e-07 8.66e-08 5.39e-08
ENSG00000228634 \N -145517 5.53e-06 6.73e-06 6.9e-07 3.45e-06 1.61e-06 1.81e-06 7.23e-06 1.12e-06 5e-06 2.99e-06 6.67e-06 3.33e-06 7.66e-06 1.75e-06 9.41e-07 3.85e-06 2e-06 3.79e-06 1.45e-06 1.16e-06 3.15e-06 4.88e-06 4.6e-06 1.48e-06 8.52e-06 2.02e-06 2.34e-06 1.57e-06 4.51e-06 4.25e-06 2.71e-06 4.91e-07 5.47e-07 1.74e-06 1.99e-06 9.6e-07 9.64e-07 4.39e-07 9.42e-07 4.88e-07 2.08e-07 7.04e-06 4.01e-07 1.55e-07 4.33e-07 1.21e-06 1.13e-06 5.05e-07 3.35e-07