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Genes within 1Mb (chr1:31772732:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -335324 sc-eQTL 6.86e-01 0.0978 0.241 0.051 B_Activated L2
ENSG00000060688 SNRNP40 475944 sc-eQTL 5.98e-01 -0.125 0.237 0.051 B_Activated L2
ENSG00000084623 EIF3I -449196 sc-eQTL 8.22e-01 -0.0513 0.227 0.051 B_Activated L2
ENSG00000084652 TXLNA -406943 sc-eQTL 1.08e-01 0.364 0.226 0.051 B_Activated L2
ENSG00000116478 HDAC1 -519351 sc-eQTL 4.07e-01 -0.179 0.216 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 475750 sc-eQTL 1.03e-01 -0.389 0.237 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -241136 sc-eQTL 3.46e-01 0.203 0.215 0.051 B_Activated L2
ENSG00000121775 TMEM39B -299299 sc-eQTL 8.59e-01 0.0402 0.226 0.051 B_Activated L2
ENSG00000134644 PUM1 706741 sc-eQTL 6.64e-01 -0.0967 0.222 0.051 B_Activated L2
ENSG00000160050 CCDC28B -427654 sc-eQTL 7.05e-02 0.366 0.201 0.051 B_Activated L2
ENSG00000160055 TMEM234 -449627 sc-eQTL 6.06e-01 0.115 0.223 0.051 B_Activated L2
ENSG00000160058 BSDC1 -621999 sc-eQTL 2.43e-01 -0.282 0.241 0.051 B_Activated L2
ENSG00000162517 PEF1 127836 sc-eQTL 3.56e-01 -0.213 0.23 0.051 B_Activated L2
ENSG00000162520 SYNC -930864 sc-eQTL 5.97e-01 0.126 0.237 0.051 B_Activated L2
ENSG00000162521 RBBP4 -878410 sc-eQTL 3.91e-01 0.197 0.229 0.051 B_Activated L2
ENSG00000175130 MARCKSL1 -563501 sc-eQTL 5.08e-01 0.14 0.211 0.051 B_Activated L2
ENSG00000176261 ZBTB8OS -878171 sc-eQTL 5.28e-01 0.138 0.218 0.051 B_Activated L2
ENSG00000182866 LCK -478507 sc-eQTL 8.97e-01 0.0206 0.158 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -172124 sc-eQTL 9.05e-01 0.0201 0.167 0.051 B_Activated L2
ENSG00000025800 KPNA6 -335324 sc-eQTL 4.13e-01 0.216 0.264 0.055 gdT L2
ENSG00000060688 SNRNP40 475944 sc-eQTL 9.71e-01 -0.0097 0.266 0.055 gdT L2
ENSG00000084623 EIF3I -449196 sc-eQTL 6.78e-01 -0.106 0.254 0.055 gdT L2
ENSG00000084652 TXLNA -406943 sc-eQTL 7.89e-01 0.0616 0.23 0.055 gdT L2
ENSG00000116478 HDAC1 -519351 sc-eQTL 1.76e-01 -0.301 0.221 0.055 gdT L2
ENSG00000121766 ZCCHC17 475750 sc-eQTL 1.26e-01 -0.349 0.227 0.055 gdT L2
ENSG00000121774 KHDRBS1 -241136 sc-eQTL 5.60e-01 -0.125 0.213 0.055 gdT L2
ENSG00000121775 TMEM39B -299299 sc-eQTL 3.91e-01 0.205 0.239 0.055 gdT L2
ENSG00000134644 PUM1 706741 sc-eQTL 9.04e-01 0.0285 0.236 0.055 gdT L2
ENSG00000160050 CCDC28B -427654 sc-eQTL 3.21e-03 0.6 0.2 0.055 gdT L2
ENSG00000160055 TMEM234 -449627 sc-eQTL 2.93e-01 0.252 0.239 0.055 gdT L2
ENSG00000160058 BSDC1 -621999 sc-eQTL 6.38e-01 0.116 0.246 0.055 gdT L2
ENSG00000162517 PEF1 127836 sc-eQTL 1.12e-01 -0.372 0.232 0.055 gdT L2
ENSG00000162520 SYNC -930864 sc-eQTL 1.80e-01 0.32 0.237 0.055 gdT L2
ENSG00000162521 RBBP4 -878410 sc-eQTL 1.17e-02 0.574 0.225 0.055 gdT L2
ENSG00000175130 MARCKSL1 -563501 sc-eQTL 8.57e-01 -0.0399 0.222 0.055 gdT L2
ENSG00000176261 ZBTB8OS -878171 sc-eQTL 9.71e-01 0.00922 0.25 0.055 gdT L2
ENSG00000182866 LCK -478507 sc-eQTL 7.95e-01 0.0379 0.146 0.055 gdT L2
ENSG00000184007 PTP4A2 -172124 sc-eQTL 1.08e-01 -0.32 0.197 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162512 SDC3 863974 eQTL 0.00239 -0.177 0.058 0.0 0.0 0.0422
ENSG00000228634 AL136115.1 -160288 eQTL 0.025 0.184 0.082 0.00167 0.0 0.0422
ENSG00000237329 AL356320.2 735998 eQTL 0.034 0.175 0.0824 0.00121 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N 7839 6.76e-05 5.93e-05 1.35e-05 2.87e-05 1.24e-05 2.84e-05 8.25e-05 1.08e-05 6.86e-05 3.84e-05 9.33e-05 3.68e-05 9.71e-05 2.91e-05 1.51e-05 4.6e-05 3.88e-05 5.21e-05 1.58e-05 1.55e-05 3.51e-05 7.77e-05 6.21e-05 2.18e-05 9.17e-05 2.18e-05 3.09e-05 3.07e-05 6.26e-05 5.25e-05 4.5e-05 5.33e-06 8.39e-06 1.34e-05 2.38e-05 1.16e-05 7.79e-06 8.73e-06 1.1e-05 6.02e-06 3.25e-06 6.36e-05 7.15e-06 1.09e-06 6.57e-06 9.8e-06 9.61e-06 5.08e-06 4.13e-06
ENSG00000162512 SDC3 863974 2.74e-07 1.36e-07 7.76e-08 2.05e-07 9.25e-08 9.76e-08 1.99e-07 5.48e-08 1.44e-07 6.75e-08 1.59e-07 1.05e-07 2.13e-07 8.07e-08 6.27e-08 8.08e-08 4.35e-08 1.64e-07 7.29e-08 4.8e-08 1.39e-07 2.06e-07 1.58e-07 3.23e-08 2.02e-07 1.31e-07 1.18e-07 1.01e-07 1.22e-07 1.17e-07 1.22e-07 3.1e-08 3.21e-08 1.02e-07 4.84e-08 2.68e-08 6.48e-08 8.2e-08 4.9e-08 3.67e-08 5.39e-08 1.35e-07 3.31e-08 1.75e-08 3.83e-08 9.65e-09 1.19e-07 3.3e-09 4.94e-08
ENSG00000228634 AL136115.1 -160288 7.89e-06 9.43e-06 2.57e-06 6.18e-06 2.25e-06 4.19e-06 1.09e-05 2.12e-06 1.26e-05 6.07e-06 1.1e-05 5.74e-06 1.46e-05 3.66e-06 3.35e-06 7.94e-06 4.69e-06 7.27e-06 3.31e-06 2.92e-06 6.47e-06 1.2e-05 7.98e-06 3.3e-06 1.65e-05 3.98e-06 6.28e-06 4.06e-06 1.08e-05 7.97e-06 6.63e-06 9.89e-07 1.23e-06 3.55e-06 5.01e-06 2.68e-06 1.75e-06 2.03e-06 2.19e-06 9.75e-07 9.75e-07 9.72e-06 2.36e-06 2.36e-07 9.55e-07 2.35e-06 1.78e-06 1.47e-06 1.3e-06
ENSG00000250135 \N -398001 1.27e-06 1.08e-06 7.56e-07 1.28e-06 3.46e-07 5.88e-07 1.23e-06 4.18e-07 1.71e-06 7.34e-07 2.07e-06 1.15e-06 2.64e-06 5.06e-07 5.5e-07 1.18e-06 1.03e-06 1.32e-06 8.06e-07 5.67e-07 1.37e-06 2.8e-06 1.17e-06 5.54e-07 2.56e-06 9.84e-07 9.97e-07 8.14e-07 1.64e-06 1.31e-06 9.07e-07 2.56e-07 3.9e-07 1.27e-06 6.01e-07 6.66e-07 8.74e-07 3.84e-07 1.22e-06 1.86e-07 3.56e-07 1.54e-06 4.6e-07 1.95e-07 2.84e-07 4.01e-07 2.71e-07 6.86e-07 3.18e-07