logo

Genes within 1Mb (chr1:31761812:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000025800 KPNA6 -346244 sc-eQTL 6.86e-01 0.0978 0.241 0.051 B_Activated L2
ENSG00000060688 SNRNP40 465024 sc-eQTL 5.98e-01 -0.125 0.237 0.051 B_Activated L2
ENSG00000084623 EIF3I -460116 sc-eQTL 8.22e-01 -0.0513 0.227 0.051 B_Activated L2
ENSG00000084652 TXLNA -417863 sc-eQTL 1.08e-01 0.364 0.226 0.051 B_Activated L2
ENSG00000116478 HDAC1 -530271 sc-eQTL 4.07e-01 -0.179 0.216 0.051 B_Activated L2
ENSG00000121766 ZCCHC17 464830 sc-eQTL 1.03e-01 -0.389 0.237 0.051 B_Activated L2
ENSG00000121774 KHDRBS1 -252056 sc-eQTL 3.46e-01 0.203 0.215 0.051 B_Activated L2
ENSG00000121775 TMEM39B -310219 sc-eQTL 8.59e-01 0.0402 0.226 0.051 B_Activated L2
ENSG00000134644 PUM1 695821 sc-eQTL 6.64e-01 -0.0967 0.222 0.051 B_Activated L2
ENSG00000160050 CCDC28B -438574 sc-eQTL 7.05e-02 0.366 0.201 0.051 B_Activated L2
ENSG00000160055 TMEM234 -460547 sc-eQTL 6.06e-01 0.115 0.223 0.051 B_Activated L2
ENSG00000160058 BSDC1 -632919 sc-eQTL 2.43e-01 -0.282 0.241 0.051 B_Activated L2
ENSG00000162517 PEF1 116916 sc-eQTL 3.56e-01 -0.213 0.23 0.051 B_Activated L2
ENSG00000162520 SYNC -941784 sc-eQTL 5.97e-01 0.126 0.237 0.051 B_Activated L2
ENSG00000162521 RBBP4 -889330 sc-eQTL 3.91e-01 0.197 0.229 0.051 B_Activated L2
ENSG00000175130 MARCKSL1 -574421 sc-eQTL 5.08e-01 0.14 0.211 0.051 B_Activated L2
ENSG00000176261 ZBTB8OS -889091 sc-eQTL 5.28e-01 0.138 0.218 0.051 B_Activated L2
ENSG00000182866 LCK -489427 sc-eQTL 8.97e-01 0.0206 0.158 0.051 B_Activated L2
ENSG00000184007 PTP4A2 -183044 sc-eQTL 9.05e-01 0.0201 0.167 0.051 B_Activated L2
ENSG00000025800 KPNA6 -346244 sc-eQTL 4.13e-01 0.216 0.264 0.055 gdT L2
ENSG00000060688 SNRNP40 465024 sc-eQTL 9.71e-01 -0.0097 0.266 0.055 gdT L2
ENSG00000084623 EIF3I -460116 sc-eQTL 6.78e-01 -0.106 0.254 0.055 gdT L2
ENSG00000084652 TXLNA -417863 sc-eQTL 7.89e-01 0.0616 0.23 0.055 gdT L2
ENSG00000116478 HDAC1 -530271 sc-eQTL 1.76e-01 -0.301 0.221 0.055 gdT L2
ENSG00000121766 ZCCHC17 464830 sc-eQTL 1.26e-01 -0.349 0.227 0.055 gdT L2
ENSG00000121774 KHDRBS1 -252056 sc-eQTL 5.60e-01 -0.125 0.213 0.055 gdT L2
ENSG00000121775 TMEM39B -310219 sc-eQTL 3.91e-01 0.205 0.239 0.055 gdT L2
ENSG00000134644 PUM1 695821 sc-eQTL 9.04e-01 0.0285 0.236 0.055 gdT L2
ENSG00000160050 CCDC28B -438574 sc-eQTL 3.21e-03 0.6 0.2 0.055 gdT L2
ENSG00000160055 TMEM234 -460547 sc-eQTL 2.93e-01 0.252 0.239 0.055 gdT L2
ENSG00000160058 BSDC1 -632919 sc-eQTL 6.38e-01 0.116 0.246 0.055 gdT L2
ENSG00000162517 PEF1 116916 sc-eQTL 1.12e-01 -0.372 0.232 0.055 gdT L2
ENSG00000162520 SYNC -941784 sc-eQTL 1.80e-01 0.32 0.237 0.055 gdT L2
ENSG00000162521 RBBP4 -889330 sc-eQTL 1.17e-02 0.574 0.225 0.055 gdT L2
ENSG00000175130 MARCKSL1 -574421 sc-eQTL 8.57e-01 -0.0399 0.222 0.055 gdT L2
ENSG00000176261 ZBTB8OS -889091 sc-eQTL 9.71e-01 0.00922 0.25 0.055 gdT L2
ENSG00000182866 LCK -489427 sc-eQTL 7.95e-01 0.0379 0.146 0.055 gdT L2
ENSG00000184007 PTP4A2 -183044 sc-eQTL 1.08e-01 -0.32 0.197 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162512 SDC3 853054 eQTL 0.00158 -0.182 0.0574 0.0 0.0 0.0427
ENSG00000228634 AL136115.1 -171208 eQTL 0.0189 0.191 0.0812 0.00188 0.0 0.0427
ENSG00000237329 AL356320.2 725078 eQTL 0.0398 0.168 0.0816 0.00111 0.0 0.0427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000121753 \N -3081 4.47e-05 3.69e-05 6.79e-06 1.61e-05 6.9e-06 1.63e-05 5.11e-05 5.4e-06 3.76e-05 1.77e-05 4.55e-05 2.12e-05 5.54e-05 1.65e-05 8.31e-06 2.43e-05 2.12e-05 2.97e-05 8.86e-06 7.35e-06 1.86e-05 4.12e-05 3.6e-05 1.03e-05 5.06e-05 9.82e-06 1.73e-05 1.53e-05 3.61e-05 2.85e-05 2.46e-05 1.75e-06 3.06e-06 7.73e-06 1.27e-05 6.29e-06 3.59e-06 3.34e-06 5.37e-06 3.6e-06 1.71e-06 4.48e-05 4.32e-06 4.08e-07 2.79e-06 4.65e-06 4.55e-06 1.71e-06 1.48e-06
ENSG00000162512 SDC3 853054 3.02e-07 1.67e-07 7.16e-08 4.29e-07 9.79e-08 8.37e-08 2.16e-07 5.37e-08 1.71e-07 6.75e-08 1.73e-07 1.22e-07 2.29e-07 8.15e-08 8.45e-08 7.5e-08 4.45e-08 1.51e-07 7.76e-08 7.49e-08 1.22e-07 1.25e-07 1.62e-07 2.83e-08 2.02e-07 1.23e-07 1.33e-07 1.04e-07 1.31e-07 1.29e-07 1.09e-07 3.08e-08 3.68e-08 1.01e-07 3e-07 3.24e-08 8.6e-08 6.46e-08 6.28e-08 6.67e-08 1.22e-07 1.33e-07 2.28e-08 1.59e-07 4e-08 1.03e-08 1e-07 1.96e-09 4.91e-08
ENSG00000228634 AL136115.1 -171208 7.7e-06 1.04e-05 1.3e-06 8.64e-06 2.57e-06 4.47e-06 1.07e-05 1.76e-06 1.05e-05 4.81e-06 1.12e-05 6.27e-06 1.36e-05 4.48e-06 4.72e-06 6.33e-06 4.36e-06 7.69e-06 3.37e-06 2.85e-06 5.84e-06 9.61e-06 6.89e-06 3.23e-06 1.75e-05 3.52e-06 5.27e-06 3.3e-06 1.02e-05 7.87e-06 5.88e-06 9.05e-07 7.03e-07 3.78e-06 4.73e-06 2.85e-06 1.76e-06 1.84e-06 1.59e-06 1.03e-06 9.74e-07 8.73e-06 2.52e-06 2.5e-07 7.98e-07 1.75e-06 1.06e-06 6.55e-07 5.14e-07
ENSG00000250135 \N -408921 1.28e-06 1.53e-06 2.86e-07 1.77e-06 3.73e-07 6.3e-07 1.5e-06 3.38e-07 1.75e-06 5.9e-07 1.84e-06 1.15e-06 2.53e-06 7.13e-07 9.53e-07 9.07e-07 9.26e-07 9.45e-07 6.65e-07 6.44e-07 7.85e-07 1.69e-06 1.03e-06 5.47e-07 2.34e-06 6.57e-07 1e-06 8.92e-07 1.46e-06 1.3e-06 8.11e-07 1.3e-07 1.88e-07 1.12e-06 1.02e-06 6.84e-07 9.25e-07 3.86e-07 4.84e-07 2.11e-07 1.51e-07 1.49e-06 5.92e-07 2.22e-07 3.73e-07 3.47e-07 2.38e-07 2.51e-07 5.35e-08