Genes within 1Mb (chr1:28903817:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116350 SRSF4 -278083 eQTL 1.11e-03 -0.0334 0.0102 0.0 0.0 0.424
ENSG00000116353 MECR -327125 pQTL 1.54e-03 -0.0342 0.0108 0.0 0.0 0.429
ENSG00000117748 RPA2 989071 pQTL 5.90e-02 0.038 0.0201 0.00119 0.0 0.429
ENSG00000158161 EYA3 815180 eQTL 1.01e-02 0.0489 0.019 0.00137 0.0 0.424
ENSG00000159023 EPB41 16726 eQTL 3.49e-02 -0.0385 0.0182 0.0 0.0 0.424
ENSG00000200087 SNORA73B 395258 eQTL 6.70e-03 0.112 0.0411 0.00117 0.0 0.424
ENSG00000204138 PHACTR4 534235 eQTL 5.48e-02 -0.0373 0.0194 0.00245 0.0 0.424
ENSG00000214812 AL137792.1 782496 eQTL 7.99e-02 0.056 0.032 0.00131 0.0 0.424
ENSG00000233427 AL009181.1 26481 eQTL 2.25e-05 0.153 0.036 0.0 0.0 0.424
ENSG00000253304 TMEM200B -220086 eQTL 2.39e-17 -0.299 0.0346 0.0 0.0 0.424
ENSG00000274266 SNORA73A 396451 eQTL 1.25e-02 0.1 0.04 0.00177 0.0 0.424


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000200087 SNORA73B 395258 1.24e-06 9.03e-07 2.7e-07 3.4e-07 1.56e-07 3.54e-07 8.73e-07 2.74e-07 8.29e-07 3.11e-07 1.25e-06 5.77e-07 1.56e-06 2.1e-07 4.26e-07 4.53e-07 7.93e-07 5.67e-07 3.79e-07 4.12e-07 2.29e-07 8.11e-07 5.77e-07 3.62e-07 1.71e-06 2.48e-07 5.24e-07 5.31e-07 7.07e-07 8.63e-07 5.1e-07 7.37e-08 1.76e-07 2.74e-07 3.35e-07 2.76e-07 2.83e-07 1.21e-07 8.24e-08 8.8e-09 1.09e-07 1.12e-06 6.11e-08 4.13e-08 2.03e-07 6.12e-08 1.58e-07 7.19e-08 5.77e-08
ENSG00000233427 AL009181.1 26481 1.51e-05 2.04e-05 2.94e-06 1.1e-05 2.96e-06 7.88e-06 2.29e-05 3.34e-06 1.73e-05 8.7e-06 2.23e-05 8.63e-06 3.13e-05 7.03e-06 5.14e-06 9.71e-06 8.87e-06 1.43e-05 4.64e-06 4.23e-06 7.96e-06 1.7e-05 1.74e-05 5.06e-06 2.8e-05 5.34e-06 7.99e-06 7.57e-06 1.77e-05 1.52e-05 1.24e-05 1.2e-06 1.49e-06 4.09e-06 7.67e-06 3.83e-06 1.73e-06 2.73e-06 2.94e-06 2.07e-06 1.14e-06 2.17e-05 2.43e-06 2.81e-07 1.15e-06 2.61e-06 2.9e-06 1.02e-06 9.71e-07
ENSG00000253304 TMEM200B -220086 2.28e-06 2.46e-06 2.69e-07 1.64e-06 4.43e-07 8.1e-07 1.56e-06 5.85e-07 1.68e-06 8.08e-07 2.43e-06 1.31e-06 3.5e-06 9.45e-07 5.7e-07 1.22e-06 1.15e-06 1.93e-06 6.59e-07 1.05e-06 6.56e-07 2.67e-06 1.81e-06 9.8e-07 3.42e-06 1.17e-06 1.18e-06 1.45e-06 1.81e-06 1.66e-06 1.55e-06 3.02e-07 5.28e-07 8.83e-07 9.21e-07 6.4e-07 7.5e-07 3.81e-07 5.97e-07 2.32e-07 3.35e-07 2.92e-06 4.24e-07 1.81e-07 3.55e-07 2.99e-07 4.08e-07 2.52e-07 2.79e-07
ENSG00000270605 \N 662364 4.21e-07 2.3e-07 7.16e-08 2.41e-07 1.06e-07 1.13e-07 3.11e-07 6.2e-08 1.89e-07 1.21e-07 2.62e-07 1.62e-07 3.95e-07 8.55e-08 7.35e-08 1.01e-07 8.64e-08 2.66e-07 7.53e-08 7.83e-08 1.27e-07 2.09e-07 1.73e-07 3.27e-08 2.99e-07 1.65e-07 1.29e-07 1.52e-07 1.44e-07 1.46e-07 1.59e-07 8.14e-08 5.2e-08 1.01e-07 7.44e-08 3.57e-08 5.45e-08 6.98e-08 6.29e-08 6.55e-08 6.28e-08 2e-07 3.19e-08 1.75e-08 3.61e-08 1.03e-08 7.66e-08 0.0 4.68e-08