Genes within 1Mb (chr1:28848488:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -388028 eQTL 1.33e-03 0.134 0.0417 0.00183 0.00104 0.108
ENSG00000126698 DNAJC8 615459 eQTL 4.00e-03 0.0654 0.0227 0.0 0.0 0.108
ENSG00000130770 ATP5IF1 612379 eQTL 2.30e-03 0.0805 0.0263 0.0 0.0 0.108
ENSG00000180198 RCC1 342545 pQTL 2.94e-02 -0.0537 0.0246 0.0 0.0 0.111
ENSG00000180198 RCC1 342545 eQTL 1.94e-03 0.091 0.0293 0.0 0.0 0.108
ENSG00000197989 SNHG12 265502 eQTL 3.32e-02 0.0516 0.0242 0.00128 0.0 0.108
ENSG00000198492 YTHDF2 111867 eQTL 8.77e-08 0.0965 0.0179 0.0 0.0 0.108
ENSG00000233427 AL009181.1 -28848 eQTL 8.24e-05 0.216 0.0545 0.0 0.0 0.108
ENSG00000270605 AL353622.1 607035 eQTL 2.80e-02 0.0854 0.0388 0.0 0.0 0.108


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000130770 ATP5IF1 612379 3.92e-07 1.83e-07 6.57e-08 2.41e-07 1.08e-07 1.08e-07 3.11e-07 6.75e-08 1.96e-07 1.21e-07 2.18e-07 1.72e-07 3.4e-07 8.66e-08 7.79e-08 1.13e-07 6.63e-08 2.43e-07 7.76e-08 8e-08 1.33e-07 2.09e-07 1.89e-07 4.25e-08 2.74e-07 1.76e-07 1.31e-07 1.46e-07 1.48e-07 1.8e-07 1.39e-07 4.71e-08 4.87e-08 1.03e-07 6.35e-08 3.94e-08 5.96e-08 6.78e-08 4.83e-08 6.92e-08 3.24e-08 2e-07 3.53e-08 1.43e-08 5.32e-08 9.65e-09 9.23e-08 0.0 4.47e-08
ENSG00000130775 \N 975945 2.74e-07 1.25e-07 4.47e-08 1.82e-07 9.16e-08 9.8e-08 1.53e-07 5.4e-08 1.45e-07 4.94e-08 1.57e-07 8.68e-08 1.45e-07 6.56e-08 6.04e-08 7.53e-08 3.87e-08 1.26e-07 5.82e-08 4.1e-08 1.13e-07 1.27e-07 1.39e-07 3.23e-08 1.4e-07 1.14e-07 1.07e-07 9.65e-08 1.09e-07 1.02e-07 9.7e-08 3.65e-08 3.66e-08 8.44e-08 8.21e-08 3.6e-08 5.11e-08 9.3e-08 6.55e-08 4.02e-08 5e-08 1.35e-07 5.24e-08 1.97e-08 4.92e-08 1.83e-08 1.22e-07 3.81e-09 4.88e-08
ENSG00000180198 RCC1 342545 1.26e-06 9.36e-07 3e-07 3.63e-07 1.96e-07 4.06e-07 1.02e-06 3.3e-07 1.14e-06 3.82e-07 1.26e-06 5.82e-07 1.53e-06 2.4e-07 4.12e-07 6.36e-07 7.76e-07 5.65e-07 4.06e-07 4.68e-07 3.07e-07 9.64e-07 7.16e-07 5.39e-07 1.71e-06 3.02e-07 6.3e-07 5.27e-07 8.97e-07 9.73e-07 5.1e-07 4.87e-08 1.94e-07 3.79e-07 3.35e-07 3.38e-07 3.64e-07 1.54e-07 1.71e-07 1.98e-08 2.98e-07 1.26e-06 5.6e-08 1.23e-08 1.87e-07 7.16e-08 1.6e-07 8.66e-08 9.13e-08
ENSG00000198492 YTHDF2 111867 4.48e-06 4.86e-06 6.91e-07 2.76e-06 1.59e-06 1.7e-06 5.03e-06 9.99e-07 5.16e-06 2.35e-06 5.33e-06 3.45e-06 7.09e-06 2.4e-06 1.27e-06 3.81e-06 1.92e-06 3.49e-06 1.5e-06 1.19e-06 3.04e-06 4.97e-06 4.64e-06 1.47e-06 6.41e-06 1.98e-06 2.47e-06 1.85e-06 4.41e-06 4.28e-06 2.73e-06 4.2e-07 5.55e-07 1.53e-06 2.16e-06 1.18e-06 1.08e-06 4.57e-07 8.6e-07 3.71e-07 7.54e-07 5.62e-06 3.83e-07 1.58e-07 6.98e-07 8.63e-07 1.03e-06 5.36e-07 4.38e-07
ENSG00000233427 AL009181.1 -28848 1.43e-05 1.48e-05 3.05e-06 9.4e-06 3.06e-06 7.51e-06 2.11e-05 3.02e-06 1.6e-05 7.9e-06 1.96e-05 7.68e-06 2.75e-05 5.92e-06 5.1e-06 9.76e-06 8.14e-06 1.41e-05 4.65e-06 4.41e-06 8.13e-06 1.52e-05 1.62e-05 5.66e-06 2.55e-05 5.36e-06 7.98e-06 7.23e-06 1.75e-05 1.7e-05 1.05e-05 1.34e-06 1.91e-06 5.09e-06 6.68e-06 4.22e-06 2.36e-06 2.71e-06 3.56e-06 2.49e-06 1.67e-06 1.89e-05 2.45e-06 3.62e-07 1.97e-06 2.63e-06 2.95e-06 1.36e-06 1.23e-06
ENSG00000270605 AL353622.1 607035 4.21e-07 1.92e-07 6.41e-08 2.45e-07 1.07e-07 1.08e-07 3.11e-07 6.72e-08 2.01e-07 1.21e-07 2.18e-07 1.82e-07 3.4e-07 8.66e-08 7.98e-08 1.14e-07 6.63e-08 2.56e-07 7.76e-08 8e-08 1.33e-07 2.09e-07 1.89e-07 4.25e-08 2.86e-07 1.76e-07 1.37e-07 1.46e-07 1.47e-07 1.81e-07 1.39e-07 4.78e-08 4.87e-08 9.98e-08 6.78e-08 4.6e-08 5.67e-08 6.78e-08 4.9e-08 7.04e-08 3.27e-08 2.15e-07 3.59e-08 1.43e-08 5.4e-08 9.86e-09 9.1e-08 0.0 4.54e-08
ENSG00000271398 \N 601344 4.21e-07 1.92e-07 7.16e-08 2.43e-07 1.06e-07 1.13e-07 3.25e-07 6.72e-08 2.01e-07 1.28e-07 2.18e-07 1.86e-07 3.48e-07 8.54e-08 8.45e-08 1.14e-07 6.81e-08 2.56e-07 8e-08 8.52e-08 1.39e-07 2.07e-07 2e-07 4.34e-08 2.86e-07 1.82e-07 1.37e-07 1.48e-07 1.54e-07 1.81e-07 1.43e-07 5.24e-08 4.98e-08 9.98e-08 6.87e-08 4.68e-08 5.76e-08 6.32e-08 4.99e-08 7.17e-08 2.78e-08 2.15e-07 3.65e-08 1.43e-08 5.49e-08 1.01e-08 9.26e-08 0.0 4.61e-08
ENSG00000279443 \N 304028 1.33e-06 9.29e-07 3.48e-07 7e-07 2.93e-07 4.82e-07 1.38e-06 3.34e-07 1.28e-06 4.24e-07 1.39e-06 6.2e-07 1.99e-06 2.83e-07 5.72e-07 8.25e-07 7.97e-07 6.13e-07 6.62e-07 7.04e-07 4.77e-07 1.3e-06 9.28e-07 6.21e-07 1.97e-06 3.91e-07 7.6e-07 7.26e-07 1.28e-06 1.23e-06 5.77e-07 1.58e-07 2.16e-07 5.78e-07 4.49e-07 4.74e-07 4.77e-07 1.61e-07 3.25e-07 1.16e-07 2.84e-07 1.53e-06 5.66e-08 2.65e-08 1.67e-07 1.11e-07 2.26e-07 8.73e-08 1.11e-07