Genes within 1Mb (chr1:28843081:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000060656 PTPRU -393435 eQTL 4.19e-02 -0.0729 0.0358 0.0 0.0 0.159
ENSG00000116353 MECR -387861 pQTL 7.72e-03 0.0376 0.0141 0.0 0.0 0.163
ENSG00000126698 DNAJC8 610052 eQTL 4.78e-03 -0.0549 0.0194 0.0 0.0 0.159
ENSG00000130770 ATP5IF1 606972 eQTL 1.80e-02 -0.0535 0.0226 0.0 0.0 0.159
ENSG00000169403 PTAFR 649145 eQTL 5.76e-02 0.0378 0.0199 0.00109 0.0 0.159
ENSG00000180198 RCC1 337138 eQTL 2.37e-05 -0.106 0.025 0.0 0.0 0.159
ENSG00000197989 SNHG12 260095 eQTL 1.59e-02 -0.05 0.0207 0.00173 0.0 0.159
ENSG00000198492 YTHDF2 106460 eQTL 2.52e-07 -0.0796 0.0153 0.0 0.0 0.159
ENSG00000204138 PHACTR4 473499 eQTL 8.15e-03 -0.0665 0.0251 0.0 0.0 0.159
ENSG00000233427 AL009181.1 -34255 eQTL 1.04e-03 -0.154 0.0468 0.0 0.0 0.159
ENSG00000253304 TMEM200B -280822 eQTL 4.58e-04 0.163 0.0462 0.0 0.0 0.159
ENSG00000270605 AL353622.1 601628 eQTL 4.62e-02 -0.0663 0.0332 0.0 0.0 0.159
ENSG00000274266 SNORA73A 335715 eQTL 3.98e-02 -0.107 0.0518 0.00146 0.0 0.159
ENSG00000279443 AL513497.1 298621 eQTL 3.95e-02 -0.0932 0.0452 0.0013 0.0 0.159


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000130766 \N 583563 4.37e-07 2.17e-07 7.76e-08 2.43e-07 1.07e-07 1.25e-07 3.25e-07 7.46e-08 2.26e-07 1.37e-07 2.47e-07 2.04e-07 3.48e-07 8.42e-08 9.2e-08 1.14e-07 8.64e-08 2.66e-07 8.68e-08 7.49e-08 1.33e-07 2.15e-07 2e-07 5.01e-08 2.99e-07 1.86e-07 1.48e-07 1.52e-07 1.58e-07 1.89e-07 1.43e-07 5.38e-08 4.76e-08 1.01e-07 1.07e-07 5.04e-08 5.45e-08 5.8e-08 4.74e-08 7.9e-08 2.84e-08 2e-07 3.26e-08 1.43e-08 5.84e-08 1.03e-08 8.94e-08 0.0 4.47e-08
ENSG00000180198 RCC1 337138 1.27e-06 9.37e-07 2.81e-07 3.44e-07 2.28e-07 4.06e-07 9.74e-07 3.28e-07 1.12e-06 3.82e-07 1.26e-06 5.49e-07 1.49e-06 2.4e-07 4.33e-07 6.22e-07 7.72e-07 5.66e-07 4.24e-07 5.57e-07 3.35e-07 9.46e-07 6.93e-07 5.1e-07 1.7e-06 3.02e-07 6.3e-07 5.27e-07 8.81e-07 9.73e-07 4.71e-07 7.28e-08 1.73e-07 4.51e-07 3.96e-07 3.71e-07 3.62e-07 1.5e-07 1.94e-07 8.82e-08 3.01e-07 1.19e-06 7.53e-08 1.21e-08 1.87e-07 7.16e-08 1.9e-07 8.58e-08 8.83e-08
ENSG00000188060 \N 250881 1.28e-06 1.18e-06 2.9e-07 1.2e-06 3.75e-07 5.99e-07 1.47e-06 4.2e-07 1.66e-06 6.05e-07 2.03e-06 9.11e-07 2.5e-06 2.98e-07 4.92e-07 9.36e-07 9.36e-07 9.7e-07 7.22e-07 4.42e-07 7.61e-07 1.91e-06 1.12e-06 5.76e-07 2.25e-06 7.81e-07 1.02e-06 9.31e-07 1.62e-06 1.16e-06 8e-07 2.78e-07 2.75e-07 5.6e-07 5.15e-07 5.26e-07 6.77e-07 3.25e-07 5.17e-07 2.44e-07 3.58e-07 1.65e-06 1.68e-07 6.55e-08 2.99e-07 1.99e-07 2.28e-07 1.16e-07 1.92e-07
ENSG00000198492 YTHDF2 106460 4.64e-06 4.83e-06 7.09e-07 3.17e-06 1.7e-06 1.74e-06 5.17e-06 1.17e-06 5.1e-06 2.48e-06 5.59e-06 3.27e-06 7.66e-06 2.06e-06 1.23e-06 3.69e-06 1.84e-06 3.82e-06 1.47e-06 1.39e-06 2.77e-06 4.9e-06 4.52e-06 1.94e-06 6.75e-06 2.01e-06 2.35e-06 1.75e-06 4.47e-06 4.58e-06 2.85e-06 4.15e-07 7.36e-07 2.15e-06 2.09e-06 1.17e-06 1.08e-06 4.71e-07 9.81e-07 5.79e-07 8.54e-07 5.71e-06 3.65e-07 1.46e-07 7.17e-07 1.22e-06 1.16e-06 7.5e-07 5.29e-07
ENSG00000204138 PHACTR4 473499 7.87e-07 4.24e-07 1.07e-07 3.58e-07 9.26e-08 1.74e-07 5.01e-07 1.38e-07 3.94e-07 2.26e-07 5.29e-07 3.68e-07 6.47e-07 1.1e-07 1.9e-07 2.05e-07 2.48e-07 3.67e-07 1.81e-07 1.43e-07 1.87e-07 3.34e-07 3.11e-07 1.44e-07 6.18e-07 2.39e-07 2.52e-07 2.24e-07 3.27e-07 4.51e-07 2.43e-07 6.2e-08 5.42e-08 1.36e-07 3.07e-07 7.98e-08 1.05e-07 7.53e-08 5.67e-08 3.09e-08 9.99e-08 3.85e-07 2.84e-08 2.04e-08 1.23e-07 1.88e-08 1.1e-07 1.15e-08 5.15e-08
ENSG00000233427 AL009181.1 -34255 1.14e-05 1.27e-05 2.46e-06 7.79e-06 2.6e-06 5.91e-06 1.68e-05 2.46e-06 1.25e-05 6.11e-06 1.6e-05 6.5e-06 2.26e-05 4.49e-06 4.14e-06 8.32e-06 7.26e-06 1.17e-05 4.11e-06 4.17e-06 6.9e-06 1.21e-05 1.27e-05 4.97e-06 2.14e-05 5.14e-06 7.16e-06 5.35e-06 1.48e-05 1.52e-05 7.97e-06 1.19e-06 1.61e-06 4.75e-06 5.86e-06 3.76e-06 2.02e-06 2.45e-06 3.25e-06 2.17e-06 1.64e-06 1.58e-05 1.82e-06 3.62e-07 1.87e-06 2.34e-06 2.48e-06 1.16e-06 1.02e-06
ENSG00000253304 TMEM200B -280822 1.21e-06 9.73e-07 2.54e-07 9.69e-07 3.47e-07 5.09e-07 1.59e-06 4.01e-07 1.46e-06 4.78e-07 1.73e-06 7.43e-07 2.13e-06 3e-07 5.65e-07 9.16e-07 9.14e-07 7.02e-07 8.48e-07 6.56e-07 6.66e-07 1.6e-06 8.59e-07 5.66e-07 2.16e-06 4.83e-07 8.99e-07 7.03e-07 1.43e-06 1.32e-06 6.76e-07 2.53e-07 1.89e-07 6.89e-07 5.87e-07 4.63e-07 5.76e-07 2.24e-07 4.94e-07 3.15e-07 2.69e-07 1.49e-06 9.55e-08 4.11e-08 2.83e-07 1.23e-07 2.16e-07 2.77e-08 1.47e-07
ENSG00000279443 AL513497.1 298621 1.31e-06 9.1e-07 3.45e-07 6.45e-07 3.23e-07 4.82e-07 1.28e-06 3.65e-07 1.35e-06 4.24e-07 1.38e-06 6.62e-07 2e-06 2.78e-07 5.73e-07 8.28e-07 8.06e-07 5.99e-07 6.96e-07 6.82e-07 4.99e-07 1.3e-06 9.21e-07 6.57e-07 1.94e-06 4.11e-07 7.73e-07 7.68e-07 1.25e-06 1.22e-06 5.72e-07 1.91e-07 1.98e-07 6.95e-07 5.36e-07 4.5e-07 5.15e-07 1.67e-07 3.89e-07 3.21e-07 2.87e-07 1.57e-06 5.94e-08 2.63e-08 1.69e-07 1.22e-07 2.41e-07 7.69e-08 1.18e-07