Genes within 1Mb (chr1:28835953:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -394989 pQTL 7.58e-03 0.0389 0.0145 0.0 0.0 0.153
ENSG00000126698 DNAJC8 602924 eQTL 4.96e-03 -0.0565 0.0201 0.0 0.0 0.149
ENSG00000130770 ATP5IF1 599844 pQTL 3.16e-02 0.0364 0.0169 0.0 0.0 0.153
ENSG00000130770 ATP5IF1 599844 eQTL 2.19e-02 -0.0536 0.0234 0.0 0.0 0.149
ENSG00000169403 PTAFR 642017 eQTL 7.46e-02 0.0367 0.0205 0.00105 0.0 0.149
ENSG00000180198 RCC1 330010 eQTL 6.70e-06 -0.117 0.0258 0.0 0.0 0.149
ENSG00000197989 SNHG12 252967 eQTL 6.26e-03 -0.0586 0.0214 0.00292 0.0 0.149
ENSG00000198492 YTHDF2 99332 eQTL 1.10e-08 -0.0911 0.0158 0.0 0.0 0.149
ENSG00000200087 SNORA73B 327394 eQTL 3.79e-02 -0.115 0.0551 0.0 0.0 0.149
ENSG00000204138 PHACTR4 466371 eQTL 4.28e-03 -0.0743 0.0259 0.0 0.0 0.149
ENSG00000233427 AL009181.1 -41383 eQTL 6.67e-03 -0.132 0.0484 0.0 0.0 0.149
ENSG00000253304 TMEM200B -287950 eQTL 4.35e-04 0.169 0.0478 0.0 0.0 0.149
ENSG00000274266 SNORA73A 328587 eQTL 3.09e-02 -0.116 0.0536 0.00167 0.0 0.149
ENSG00000279443 AL513497.1 291493 eQTL 3.43e-02 -0.0991 0.0468 0.00136 0.0 0.149


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000180198 RCC1 330010 1.27e-06 1.01e-06 3.32e-07 1.14e-06 3.45e-07 5.96e-07 1.64e-06 3.85e-07 1.49e-06 4.7e-07 1.83e-06 6.45e-07 2.29e-06 2.87e-07 5.31e-07 9.13e-07 8.9e-07 7.08e-07 8.48e-07 6.49e-07 7.37e-07 1.63e-06 8.61e-07 6.57e-07 2.25e-06 5.38e-07 9.05e-07 8.91e-07 1.48e-06 1.32e-06 7.26e-07 1.85e-07 2.45e-07 6.69e-07 5.6e-07 4.56e-07 6.22e-07 2.31e-07 3.34e-07 2.66e-07 2.92e-07 1.63e-06 9.55e-08 1.3e-07 3.07e-07 1.12e-07 2.33e-07 3.73e-08 1.14e-07
ENSG00000188060 \N 243753 2.04e-06 2.46e-06 2.54e-07 1.53e-06 4.41e-07 7.21e-07 1.31e-06 4.94e-07 1.7e-06 7.65e-07 1.92e-06 1.45e-06 3.3e-06 9.24e-07 4.19e-07 1.15e-06 1.07e-06 1.36e-06 5.3e-07 7.62e-07 7.37e-07 2.02e-06 1.75e-06 8.41e-07 2.87e-06 1.13e-06 1.16e-06 1.38e-06 1.76e-06 1.62e-06 1.07e-06 2.65e-07 4.19e-07 8.93e-07 9.1e-07 6.69e-07 7.27e-07 3.65e-07 4.82e-07 2.29e-07 3.03e-07 2.89e-06 4.33e-07 1.99e-07 3.29e-07 2.99e-07 4.03e-07 2.64e-07 2.91e-07
ENSG00000198492 YTHDF2 99332 5.87e-06 7.64e-06 6.57e-07 3.47e-06 1.73e-06 1.91e-06 8.67e-06 1.18e-06 4.76e-06 3.15e-06 8.54e-06 2.94e-06 1.06e-05 2.82e-06 9.47e-07 4.12e-06 3e-06 3.74e-06 1.81e-06 1.63e-06 3.02e-06 6.81e-06 5.2e-06 1.92e-06 9.69e-06 2.3e-06 2.92e-06 2.11e-06 6.75e-06 6.62e-06 3.37e-06 4.15e-07 8.21e-07 2.34e-06 1.99e-06 1.6e-06 1.2e-06 5.24e-07 9.67e-07 5.64e-07 7.88e-07 8.58e-06 6.89e-07 1.49e-07 7.83e-07 7.62e-07 1.04e-06 7.1e-07 5.44e-07
ENSG00000204138 PHACTR4 466371 1.21e-06 7.58e-07 1.31e-07 4.25e-07 1.11e-07 3.24e-07 6.33e-07 2.25e-07 6.52e-07 3.04e-07 1.08e-06 5.01e-07 1.03e-06 1.76e-07 3.12e-07 3.4e-07 5.34e-07 4.39e-07 2.88e-07 2.15e-07 2.55e-07 5.37e-07 4.59e-07 2.49e-07 1.39e-06 2.64e-07 4.27e-07 4.23e-07 5.78e-07 7.39e-07 4.08e-07 5.25e-08 5.89e-08 2.04e-07 3.57e-07 1.85e-07 1.91e-07 1.14e-07 7.63e-08 1.61e-08 1.22e-07 7.54e-07 5.03e-08 2.64e-08 1.89e-07 3.5e-08 1.1e-07 4.41e-08 5.95e-08
ENSG00000253304 TMEM200B -287950 1.36e-06 1.42e-06 2.24e-07 1.26e-06 4.13e-07 6.36e-07 1.43e-06 4.39e-07 1.77e-06 6.28e-07 2.02e-06 9.11e-07 2.67e-06 3.58e-07 4.89e-07 9.52e-07 1.02e-06 1.05e-06 6.79e-07 4.74e-07 7.41e-07 1.97e-06 1.17e-06 6.1e-07 2.41e-06 7.6e-07 1.06e-06 9.81e-07 1.71e-06 1.29e-06 8.51e-07 3.01e-07 3.16e-07 5.84e-07 6.04e-07 5.41e-07 7.58e-07 3.16e-07 4.67e-07 3.32e-07 2.58e-07 2.05e-06 2.48e-07 1.74e-07 3.65e-07 2.3e-07 2.46e-07 1.41e-07 1.85e-07
ENSG00000279443 AL513497.1 291493 1.4e-06 1.33e-06 2.59e-07 1.21e-06 3.86e-07 6.27e-07 1.52e-06 4.2e-07 1.67e-06 6.05e-07 2.07e-06 9.12e-07 2.66e-06 3.41e-07 5.06e-07 9.54e-07 9.75e-07 1.06e-06 6.56e-07 4.83e-07 7.41e-07 1.91e-06 1.14e-06 5.3e-07 2.34e-06 7.38e-07 1.04e-06 8.75e-07 1.63e-06 1.27e-06 8.13e-07 2.98e-07 2.82e-07 6.06e-07 5.99e-07 5.35e-07 7.26e-07 3.23e-07 4.74e-07 3e-07 2.71e-07 1.91e-06 2.32e-07 1.57e-07 3.73e-07 2.03e-07 2.56e-07 1.39e-07 1.83e-07