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Genes within 1Mb (chr1:28349584:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000009780 FAM76A 623605 sc-eQTL 3.42e-01 0.196 0.206 0.05 CD4_CTL L2
ENSG00000116350 SRSF4 -832316 sc-eQTL 7.12e-01 -0.074 0.2 0.05 CD4_CTL L2
ENSG00000116353 MECR -881358 sc-eQTL 8.38e-01 0.0415 0.203 0.05 CD4_CTL L2
ENSG00000117748 RPA2 434838 sc-eQTL 1.56e-01 0.249 0.175 0.05 CD4_CTL L2
ENSG00000117751 PPP1R8 518802 sc-eQTL 6.88e-01 0.0863 0.215 0.05 CD4_CTL L2
ENSG00000117758 STX12 576365 sc-eQTL 7.93e-01 -0.058 0.22 0.05 CD4_CTL L2
ENSG00000120656 TAF12 -293501 sc-eQTL 5.73e-01 0.116 0.205 0.05 CD4_CTL L2
ENSG00000126698 DNAJC8 116555 sc-eQTL 4.83e-02 0.357 0.18 0.05 CD4_CTL L2
ENSG00000126705 AHDC1 745153 sc-eQTL 9.84e-01 0.00411 0.201 0.05 CD4_CTL L2
ENSG00000126709 IFI6 677386 sc-eQTL 4.79e-01 -0.138 0.195 0.05 CD4_CTL L2
ENSG00000130766 SESN2 90066 sc-eQTL 5.49e-01 0.103 0.171 0.05 CD4_CTL L2
ENSG00000130770 ATP5IF1 113475 sc-eQTL 9.49e-01 -0.0131 0.206 0.05 CD4_CTL L2
ENSG00000130772 MED18 20582 sc-eQTL 8.66e-01 0.0317 0.187 0.05 CD4_CTL L2
ENSG00000130775 THEMIS2 477041 sc-eQTL 2.21e-01 -0.252 0.205 0.05 CD4_CTL L2
ENSG00000142733 MAP3K6 982623 sc-eQTL 6.79e-01 -0.0806 0.195 0.05 CD4_CTL L2
ENSG00000158156 XKR8 390122 sc-eQTL 8.29e-01 0.0488 0.225 0.05 CD4_CTL L2
ENSG00000158161 EYA3 260947 sc-eQTL 4.88e-01 0.139 0.2 0.05 CD4_CTL L2
ENSG00000158195 WASF2 859417 sc-eQTL 9.25e-01 -0.0196 0.209 0.05 CD4_CTL L2
ENSG00000159023 EPB41 -537507 sc-eQTL 1.25e-01 0.309 0.201 0.05 CD4_CTL L2
ENSG00000162419 GMEB1 -319148 sc-eQTL 4.06e-01 0.178 0.214 0.05 CD4_CTL L2
ENSG00000180098 TRNAU1AP -203501 sc-eQTL 2.36e-01 -0.246 0.207 0.05 CD4_CTL L2
ENSG00000180198 RCC1 -156359 sc-eQTL 9.32e-01 0.016 0.188 0.05 CD4_CTL L2
ENSG00000197989 SNHG12 -233548 sc-eQTL 8.05e-03 -0.53 0.198 0.05 CD4_CTL L2
ENSG00000198492 YTHDF2 -387037 sc-eQTL 3.84e-01 0.162 0.186 0.05 CD4_CTL L2
ENSG00000204138 PHACTR4 -19998 sc-eQTL 2.77e-01 -0.24 0.22 0.05 CD4_CTL L2
ENSG00000229388 LINC01715 -293644 sc-eQTL 3.97e-01 -0.143 0.168 0.05 CD4_CTL L2
ENSG00000237429 BX293535.1 823779 sc-eQTL 4.12e-01 -0.124 0.151 0.05 CD4_CTL L2
ENSG00000242125 SNHG3 -156396 sc-eQTL 1.77e-01 0.245 0.181 0.05 CD4_CTL L2
ENSG00000000938 FGR 714399 sc-eQTL 9.16e-01 -0.0157 0.147 0.052 gdT L2
ENSG00000009780 FAM76A 623605 sc-eQTL 7.62e-01 0.0681 0.225 0.052 gdT L2
ENSG00000116350 SRSF4 -832316 sc-eQTL 8.17e-01 0.0584 0.252 0.052 gdT L2
ENSG00000116353 MECR -881358 sc-eQTL 2.89e-01 0.267 0.25 0.052 gdT L2
ENSG00000117748 RPA2 434838 sc-eQTL 1.72e-01 -0.27 0.196 0.052 gdT L2
ENSG00000117751 PPP1R8 518802 sc-eQTL 4.47e-01 0.186 0.244 0.052 gdT L2
ENSG00000117758 STX12 576365 sc-eQTL 2.33e-01 -0.307 0.256 0.052 gdT L2
ENSG00000120656 TAF12 -293501 sc-eQTL 3.50e-01 0.223 0.238 0.052 gdT L2
ENSG00000126698 DNAJC8 116555 sc-eQTL 6.42e-01 -0.104 0.223 0.052 gdT L2
ENSG00000126705 AHDC1 745153 sc-eQTL 9.34e-01 0.0189 0.229 0.052 gdT L2
ENSG00000126709 IFI6 677386 sc-eQTL 3.03e-01 -0.203 0.196 0.052 gdT L2
ENSG00000130766 SESN2 90066 sc-eQTL 5.15e-01 -0.153 0.234 0.052 gdT L2
ENSG00000130770 ATP5IF1 113475 sc-eQTL 9.65e-01 0.0103 0.234 0.052 gdT L2
ENSG00000130772 MED18 20582 sc-eQTL 9.66e-01 -0.00898 0.209 0.052 gdT L2
ENSG00000130775 THEMIS2 477041 sc-eQTL 8.32e-01 0.0518 0.244 0.052 gdT L2
ENSG00000142733 MAP3K6 982623 sc-eQTL 8.71e-01 0.0399 0.245 0.052 gdT L2
ENSG00000158156 XKR8 390122 sc-eQTL 3.99e-01 0.195 0.23 0.052 gdT L2
ENSG00000158161 EYA3 260947 sc-eQTL 5.76e-01 -0.13 0.232 0.052 gdT L2
ENSG00000158195 WASF2 859417 sc-eQTL 2.70e-01 0.261 0.236 0.052 gdT L2
ENSG00000159023 EPB41 -537507 sc-eQTL 7.22e-01 0.0786 0.22 0.052 gdT L2
ENSG00000162419 GMEB1 -319148 sc-eQTL 7.79e-01 0.0669 0.238 0.052 gdT L2
ENSG00000180098 TRNAU1AP -203501 sc-eQTL 9.86e-01 0.0039 0.227 0.052 gdT L2
ENSG00000180198 RCC1 -156359 sc-eQTL 2.45e-01 -0.268 0.23 0.052 gdT L2
ENSG00000197989 SNHG12 -233548 sc-eQTL 1.92e-01 -0.29 0.221 0.052 gdT L2
ENSG00000198492 YTHDF2 -387037 sc-eQTL 5.02e-01 0.166 0.246 0.052 gdT L2
ENSG00000204138 PHACTR4 -19998 sc-eQTL 1.06e-01 -0.361 0.221 0.052 gdT L2
ENSG00000242125 SNHG3 -156396 sc-eQTL 3.22e-01 0.215 0.216 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -881358 eQTL 0.049 0.0882 0.0447 0.00107 0.0 0.0432
ENSG00000117748 RPA2 434838 pQTL 0.0527 -0.0952 0.0491 0.00115 0.0 0.0415
ENSG00000117758 STX12 576365 eQTL 0.0105 0.0828 0.0323 0.00269 0.00128 0.0432
ENSG00000126698 DNAJC8 116555 eQTL 0.00384 -0.104 0.0357 0.0 0.0 0.0432
ENSG00000130766 SESN2 90066 eQTL 1.94e-08 0.159 0.0281 0.0109 0.00984 0.0432
ENSG00000130770 ATP5IF1 113475 pQTL 0.000911 0.102 0.0306 0.0 0.0 0.0415
ENSG00000130770 ATP5IF1 113475 eQTL 0.00377 -0.121 0.0415 0.0 0.0 0.0432
ENSG00000158195 WASF2 859417 eQTL 0.0188 0.0829 0.0352 0.00109 0.0 0.0432
ENSG00000180198 RCC1 -156359 eQTL 0.0062 -0.127 0.0462 0.0 0.0 0.0432
ENSG00000198492 YTHDF2 -387037 eQTL 5.18e-05 -0.115 0.0284 0.00106 0.0 0.0432
ENSG00000204138 PHACTR4 -19998 eQTL 1.65e-19 -0.41 0.0444 0.0 0.0 0.0432
ENSG00000233975 LINC02574 686862 eQTL 0.069 0.112 0.0614 0.00134 0.0 0.0432
ENSG00000242125 SNHG3 -156396 eQTL 1.19e-03 0.0814 0.025 0.00223 0.00162 0.0432

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117758 STX12 576365 4.89e-07 2.3e-07 7.92e-08 2.43e-07 1.05e-07 1.28e-07 3.11e-07 7.46e-08 2.26e-07 1.39e-07 2.62e-07 2.04e-07 3.48e-07 8.42e-08 9.12e-08 1.17e-07 8.64e-08 2.83e-07 9.19e-08 7.4e-08 1.35e-07 2.15e-07 2e-07 5.6e-08 2.99e-07 1.9e-07 1.57e-07 1.68e-07 1.58e-07 2e-07 1.52e-07 6.78e-08 5.09e-08 1.03e-07 1.22e-07 5.32e-08 5.45e-08 5.53e-08 4.83e-08 7.9e-08 2.81e-08 1.79e-07 3.31e-08 1.07e-08 8.45e-08 8.94e-09 9.1e-08 2.75e-09 4.59e-08
ENSG00000130766 SESN2 90066 5.28e-06 5.34e-06 6.54e-07 3.45e-06 1.7e-06 1.53e-06 7.26e-06 1.18e-06 4.8e-06 2.85e-06 7.02e-06 3.12e-06 8.81e-06 1.79e-06 9.51e-07 3.78e-06 2.51e-06 3.93e-06 1.65e-06 1.63e-06 2.61e-06 5.5e-06 4.8e-06 1.95e-06 8.52e-06 2.14e-06 2.69e-06 1.67e-06 5.81e-06 6.42e-06 2.64e-06 4.86e-07 7.23e-07 2.44e-06 1.89e-06 1.6e-06 1.12e-06 5.58e-07 1.09e-06 7.37e-07 8.99e-07 7.06e-06 5.97e-07 1.64e-07 7.34e-07 9.92e-07 9.77e-07 7.08e-07 6.2e-07
ENSG00000198492 YTHDF2 -387037 1.26e-06 6.99e-07 1.76e-07 4.31e-07 1.54e-07 3.28e-07 6.33e-07 2.26e-07 7.15e-07 3.11e-07 1.03e-06 5.35e-07 1.05e-06 1.72e-07 3.61e-07 3.96e-07 5.63e-07 4.52e-07 3.26e-07 3.09e-07 2.41e-07 5.49e-07 4.66e-07 3.09e-07 1.22e-06 2.53e-07 4.71e-07 4.06e-07 5.9e-07 8.36e-07 3.81e-07 4.47e-08 9.46e-08 2.15e-07 3.32e-07 2.59e-07 1.44e-07 1.17e-07 8.35e-08 8.72e-09 1.67e-07 7.2e-07 5.98e-08 1.05e-08 1.93e-07 4.43e-08 1.45e-07 7.19e-08 5.62e-08
ENSG00000204138 PHACTR4 -19998 1.46e-05 1.57e-05 3.55e-06 9.98e-06 3.38e-06 8.16e-06 2.29e-05 3.39e-06 1.66e-05 8.5e-06 2.11e-05 8.18e-06 3.08e-05 7.03e-06 5.14e-06 1.02e-05 9.2e-06 1.53e-05 5.97e-06 5.17e-06 8.88e-06 1.67e-05 1.77e-05 7.18e-06 2.74e-05 5.34e-06 7.99e-06 7.77e-06 1.9e-05 2.19e-05 1.15e-05 1.67e-06 2.38e-06 6.27e-06 7.51e-06 4.67e-06 2.82e-06 2.89e-06 4.13e-06 3.13e-06 1.75e-06 2.07e-05 2.54e-06 4.33e-07 2.04e-06 2.7e-06 3.27e-06 1.41e-06 1.37e-06
ENSG00000238231 \N 359060 1.27e-06 8.69e-07 2.81e-07 3.71e-07 2.1e-07 3.12e-07 7.22e-07 2.71e-07 8.61e-07 3.11e-07 1.09e-06 5.95e-07 1.28e-06 2.1e-07 4.21e-07 4.84e-07 7.22e-07 5.2e-07 3.95e-07 4.25e-07 2.86e-07 6.91e-07 5.66e-07 4.38e-07 1.47e-06 2.55e-07 5.56e-07 5e-07 7.07e-07 9.08e-07 4.59e-07 3.86e-08 1.36e-07 3.03e-07 3.27e-07 3.1e-07 2.04e-07 1.39e-07 1.12e-07 9.81e-09 2.17e-07 9.14e-07 6.68e-08 5.71e-09 1.82e-07 7.16e-08 1.78e-07 8.82e-08 6.51e-08