Genes within 1Mb (chr1:28323866:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116353 MECR -907076 eQTL 4.13e-02 0.0936 0.0458 0.00115 0.0 0.0422
ENSG00000117748 RPA2 409120 pQTL 4.23e-02 -0.102 0.0501 0.00121 0.0 0.0408
ENSG00000117758 STX12 550647 eQTL 1.44e-02 0.0812 0.0331 0.00232 0.0 0.0422
ENSG00000126698 DNAJC8 90837 eQTL 2.45e-03 -0.111 0.0366 0.0 0.0 0.0422
ENSG00000130766 SESN2 64348 eQTL 2.02e-08 0.163 0.0288 0.00985 0.00663 0.0422
ENSG00000130770 ATP5IF1 87757 pQTL 9.60e-04 0.103 0.0313 0.0 0.0 0.0408
ENSG00000130770 ATP5IF1 87757 eQTL 6.38e-03 -0.116 0.0426 0.0 0.0 0.0422
ENSG00000142765 SYTL1 981846 eQTL 1.16e-01 -0.0599 0.0381 0.00123 0.0 0.0422
ENSG00000158195 WASF2 833699 eQTL 1.92e-02 0.0847 0.0361 0.00111 0.0 0.0422
ENSG00000180198 RCC1 -182077 eQTL 1.71e-02 -0.113 0.0474 0.0 0.0 0.0422
ENSG00000198492 YTHDF2 -412755 eQTL 6.22e-05 -0.117 0.0291 0.00108 0.0 0.0422
ENSG00000204138 PHACTR4 -45716 eQTL 3.77e-19 -0.417 0.0456 0.0 0.0 0.0422
ENSG00000233975 LINC02574 661144 eQTL 5.37e-02 0.122 0.0629 0.00146 0.0 0.0422
ENSG00000242125 SNHG3 -182114 eQTL 1.94e-03 0.0798 0.0257 0.00175 0.0011 0.0422


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117758 STX12 550647 1.26e-06 1.33e-07 6.26e-08 2.05e-07 8.83e-08 8.89e-08 1.81e-07 5.35e-08 1.45e-07 4.38e-08 1.55e-07 8.14e-08 1.79e-07 7.64e-08 6.02e-08 7.98e-08 4.09e-08 1.56e-07 5.36e-08 4.42e-08 1.26e-07 1.26e-07 1.44e-07 4.05e-08 1.72e-07 1.19e-07 1.07e-07 9.57e-08 1.16e-07 1.17e-07 9.92e-08 3.95e-08 2.92e-08 8.68e-08 5.64e-08 3.04e-08 5.37e-08 9.56e-08 7.47e-08 3.12e-08 3.34e-08 1.46e-07 4.17e-08 2.48e-08 9.21e-08 1.67e-08 1.23e-07 4.6e-09 4.72e-08
ENSG00000130766 SESN2 64348 0.000112 1.21e-05 7.58e-06 4.6e-06 2.08e-06 5.06e-06 1.04e-05 1.11e-06 1e-05 4.12e-06 1.04e-05 4.94e-06 1.39e-05 3.59e-06 2.33e-06 7.43e-06 9.2e-06 9.78e-06 2.58e-06 2.65e-06 5.19e-06 1.04e-05 8.67e-06 2.18e-06 2.41e-05 4.53e-06 4.47e-06 3.91e-06 1.2e-05 7.93e-06 4.97e-06 9.46e-07 8.75e-07 2.83e-06 4.87e-06 3.03e-06 1.73e-06 1.56e-06 1.62e-06 4.88e-07 9.9e-07 1.16e-05 2.66e-06 1.61e-07 7.87e-07 1.32e-06 1.91e-06 6.09e-07 2.31e-07
ENSG00000198492 YTHDF2 -412755 1.61e-06 4.24e-07 1.46e-07 3.48e-07 9.94e-08 2.12e-07 4.14e-07 5.37e-08 2.56e-07 6.08e-08 2.62e-07 1.31e-07 5.54e-07 1.01e-07 6.53e-08 2.05e-07 1.35e-07 3.67e-07 7.39e-08 5.75e-08 1.59e-07 2.63e-07 2.26e-07 3.51e-08 6.59e-07 1.26e-07 1.48e-07 1.42e-07 1.76e-07 5.17e-07 1.59e-07 3.89e-08 3.43e-08 9.3e-08 1.54e-07 6.85e-08 5.67e-08 8.61e-08 6.41e-08 3.37e-08 3.89e-08 3.06e-07 4.47e-08 7.61e-09 6.38e-08 1.71e-08 7.83e-08 4.2e-09 4.74e-08
ENSG00000204138 PHACTR4 -45716 9.22e-05 1.54e-05 8.22e-06 7.03e-06 2.35e-06 6.44e-06 1.57e-05 1.54e-06 1.37e-05 5.57e-06 1.42e-05 6.46e-06 2.17e-05 5.17e-06 3.71e-06 9.23e-06 1.2e-05 1.31e-05 3.09e-06 2.81e-06 6.47e-06 1.35e-05 1.36e-05 3.29e-06 3.08e-05 5.31e-06 6.74e-06 5.4e-06 1.54e-05 1.2e-05 7.65e-06 9.95e-07 1.21e-06 3.58e-06 6.48e-06 3.97e-06 1.82e-06 1.91e-06 2.08e-06 8.68e-07 9.41e-07 1.6e-05 3.25e-06 1.58e-07 7.75e-07 1.74e-06 2.5e-06 7.75e-07 3.41e-07
ENSG00000238231 \N 333342 4.19e-06 9e-07 2.13e-07 3.44e-07 1.07e-07 4.39e-07 7.02e-07 5.68e-08 6.92e-07 1.21e-07 8.58e-07 3.21e-07 1.28e-06 2.14e-07 2.26e-07 5.87e-07 7.78e-07 5.72e-07 1.55e-07 1.17e-07 2.42e-07 5.76e-07 3.99e-07 1.23e-07 1.8e-06 2.29e-07 3.48e-07 2.65e-07 5.42e-07 9.73e-07 3.67e-07 3.66e-08 5.09e-08 1.25e-07 3.57e-07 3.1e-07 1.02e-07 5.71e-08 5.4e-08 3.6e-08 5.8e-08 8.03e-07 5e-08 1.53e-08 3.42e-08 9.49e-09 1.04e-07 3.81e-09 4.77e-08