Genes within 1Mb (chr1:28288080:TAG:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000000938 FGR 652895 eQTL 2.01e-01 0.0487 0.038 0.00105 0.0 0.0186
ENSG00000060656 PTPRU -948436 eQTL 4.34e-03 -0.289 0.101 0.00161 0.0 0.0186
ENSG00000117758 STX12 514861 eQTL 5.29e-03 0.139 0.0496 0.00591 0.00197 0.0186
ENSG00000126698 DNAJC8 55051 eQTL 1.00e-13 -0.405 0.0536 0.0 0.00612 0.0186
ENSG00000126705 AHDC1 683649 eQTL 2.32e-02 0.116 0.0508 0.00195 0.0 0.0186
ENSG00000130766 SESN2 28562 eQTL 8.25e-04 -0.147 0.0437 0.0 0.0 0.0186
ENSG00000130770 ATP5IF1 51971 eQTL 1.59e-10 -0.406 0.0628 0.0 0.0 0.0186
ENSG00000130775 THEMIS2 415537 eQTL 1.08e-03 0.111 0.0338 0.0014 0.0 0.0186
ENSG00000159023 EPB41 -599011 eQTL 5.23e-02 0.13 0.067 0.00164 0.0 0.0186
ENSG00000162419 GMEB1 -380652 eQTL 6.30e-02 -0.104 0.0556 0.00142 0.0 0.0186
ENSG00000169403 PTAFR 94144 eQTL 3.41e-03 0.165 0.0561 0.00108 0.0 0.0186
ENSG00000174950 CD164L2 904747 eQTL 2.73e-02 -0.298 0.135 0.0 0.0 0.0186
ENSG00000181773 GPR3 895458 eQTL 4.77e-03 -0.27 0.0955 0.0 0.0 0.0186
ENSG00000198492 YTHDF2 -448541 eQTL 2.91e-01 0.0465 0.044 0.00202 0.0 0.0186
ENSG00000214812 AL137792.1 166759 eQTL 8.86e-02 0.2 0.117 0.0013 0.0 0.0186
ENSG00000253304 TMEM200B -835823 eQTL 3.33e-02 0.28 0.132 0.0 0.0 0.0186
ENSG00000271398 AL353622.2 40936 eQTL 3.53e-02 -0.214 0.101 0.0 0.0 0.0186


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -948436 2.77e-07 1.11e-07 3.41e-08 1.66e-07 1.03e-07 9.05e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.4e-08 1.23e-07 6.1e-08 4.48e-08 7.76e-08 5.2e-08 1.06e-07 4.91e-08 2.93e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8.21e-08 1.01e-07 4.23e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.37e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000126698 DNAJC8 55051 0.000124 9.4e-06 6.05e-07 2.14e-06 8.7e-07 8.25e-06 9.57e-06 3.56e-07 5e-06 2.11e-06 6.12e-06 3.28e-06 1.8e-05 3.74e-06 3.49e-06 7.31e-06 3.19e-06 8.11e-06 1.61e-06 6.83e-07 3.37e-06 8.85e-06 6.76e-06 1.57e-06 1.19e-05 2.34e-06 2.56e-06 1.79e-06 6.27e-06 6.94e-06 4.32e-06 6.92e-08 2.76e-07 5.85e-07 1.62e-06 6.2e-07 6.8e-07 3.48e-07 4.12e-07 2.25e-07 1.21e-07 7.52e-05 6.7e-07 2.06e-08 3.75e-07 3.28e-07 1.04e-06 2.28e-08 5.39e-08
ENSG00000126705 AHDC1 683649 5.74e-07 1.08e-07 3.28e-08 1.67e-07 1.03e-07 9.32e-08 1.41e-07 5.29e-08 1.37e-07 3.99e-08 1.63e-07 7.49e-08 1.3e-07 6.07e-08 4.48e-08 8.01e-08 5.15e-08 1.1e-07 4.91e-08 2.93e-08 1.03e-07 1.33e-07 1.29e-07 5.23e-08 1.29e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.75e-08 3.29e-08 2.6e-08 8.09e-08 9.51e-08 4.23e-08 4.01e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.46e-07 4.33e-08 0.0 1.15e-07 1.86e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000130766 SESN2 28562 0.000215 2.16e-05 1.93e-06 5.34e-06 2.38e-06 2.44e-05 2.2e-05 9.99e-07 1.15e-05 4.47e-06 1.58e-05 6.41e-06 4.65e-05 5.28e-06 7.03e-06 1.42e-05 8.14e-06 2.19e-05 2.38e-06 9.5e-07 6.86e-06 2.43e-05 1.74e-05 3.21e-06 2.77e-05 5.13e-06 6.68e-06 2.64e-06 1.48e-05 1.18e-05 1.04e-05 2.87e-07 5.47e-07 1.54e-06 3.88e-06 1.35e-06 1.05e-06 5.24e-07 9.31e-07 7.21e-07 2.08e-07 0.000117 3.98e-06 5.72e-08 7.99e-07 1.12e-06 1.98e-06 2.32e-07 2.55e-07
ENSG00000130770 ATP5IF1 51971 0.000129 9.82e-06 6.95e-07 2.43e-06 9.11e-07 8.91e-06 1e-05 3.71e-07 4.59e-06 2.41e-06 6.72e-06 3.3e-06 1.88e-05 3.8e-06 3.66e-06 7.94e-06 3.71e-06 8.89e-06 1.46e-06 6.31e-07 3.52e-06 9.49e-06 6.82e-06 1.38e-06 1.24e-05 2.38e-06 2.49e-06 1.84e-06 6.66e-06 7.35e-06 4.49e-06 5.93e-08 3.19e-07 6.49e-07 1.87e-06 6.69e-07 7.34e-07 3.36e-07 4.72e-07 2.32e-07 1.92e-07 7.93e-05 8.59e-07 1.74e-08 3.91e-07 3.29e-07 1.12e-06 3.09e-08 6.58e-08
ENSG00000130775 THEMIS2 415537 1.28e-06 1.25e-07 3.65e-08 1.78e-07 1.02e-07 8.33e-08 2.1e-07 5.29e-08 1.45e-07 4.23e-08 1.57e-07 8.02e-08 2.38e-07 6.38e-08 4.89e-08 7.23e-08 4.94e-08 1.4e-07 5.22e-08 2.88e-08 1.05e-07 1.24e-07 1.39e-07 5.01e-08 1.63e-07 1.15e-07 1.1e-07 8.71e-08 1.03e-07 1.07e-07 9.7e-08 3.29e-08 2.75e-08 8.26e-08 8.82e-08 4.12e-08 4.7e-08 8.48e-08 8.44e-08 3.87e-08 2.6e-08 4.55e-07 4.34e-08 0.0 1.15e-07 1.8e-08 1.37e-07 4.96e-09 4.72e-08
ENSG00000180098 \N -265005 4.17e-06 2.5e-07 5.03e-08 2.07e-07 9.02e-08 3.22e-07 6.06e-07 5.21e-08 2.66e-07 4.94e-08 2.47e-07 1.01e-07 1.16e-06 8.66e-08 6.17e-08 2.55e-07 4.18e-08 3.44e-07 5.39e-08 3.29e-08 1.33e-07 2.76e-07 2.56e-07 4.13e-08 6.59e-07 1.39e-07 1.07e-07 9.61e-08 1.47e-07 4.61e-07 1.76e-07 3.19e-08 2.74e-08 8.49e-08 4.04e-08 3.93e-08 4.95e-08 9.2e-08 8.22e-08 3.34e-08 3.58e-08 1.8e-06 3.91e-08 0.0 1.09e-07 1.69e-08 1.26e-07 4.96e-09 4.72e-08
ENSG00000181773 GPR3 895458 2.95e-07 1.11e-07 3.34e-08 1.65e-07 1.03e-07 9.05e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.4e-08 1.23e-07 6.1e-08 4.48e-08 7.76e-08 5.15e-08 1.06e-07 4.91e-08 2.93e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8.21e-08 1.01e-07 4.23e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.35e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.5e-07 4.96e-09 4.72e-08