Genes within 1Mb (chr1:28255397:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000000938 FGR 620212 eQTL 6.08e-02 -0.0426 0.0227 0.00156 0.0 0.0613
ENSG00000009780 FAM76A 529418 eQTL 4.04e-02 0.0747 0.0364 0.0 0.0 0.0613
ENSG00000116353 MECR -975545 pQTL 1.02e-02 0.0597 0.0232 0.0 0.0 0.0611
ENSG00000117751 PPP1R8 424615 eQTL 2.91e-02 -0.0737 0.0337 0.0 0.0 0.0613
ENSG00000130768 SMPDL3B 320397 eQTL 2.09e-02 -0.118 0.0508 0.0 0.0 0.0613
ENSG00000142733 MAP3K6 888436 eQTL 9.23e-03 0.125 0.0479 0.00115 0.0 0.0613
ENSG00000169403 PTAFR 61461 eQTL 2.17e-03 -0.103 0.0335 0.0 0.0 0.0613
ENSG00000181773 GPR3 862775 eQTL 1.10e-02 -0.145 0.0571 0.0 0.0 0.0613
ENSG00000204138 PHACTR4 -114185 eQTL 2.86e-03 0.127 0.0424 0.0 0.0 0.0613


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000130768 SMPDL3B 320397 7.23e-07 2.88e-07 5.72e-08 3.05e-07 9.21e-08 1.13e-07 2.95e-07 5.56e-08 1.89e-07 1.03e-07 3.66e-07 1.23e-07 4.74e-07 8.66e-08 1.01e-07 7.89e-08 4.45e-08 2.04e-07 7.12e-08 5.07e-08 1.22e-07 2.07e-07 1.86e-07 3.07e-08 2.59e-07 1.39e-07 1.25e-07 1.52e-07 1.39e-07 1.1e-07 1.76e-07 3.66e-08 4.23e-08 9.81e-08 1.29e-07 3.04e-08 5.65e-08 9.26e-08 6.62e-08 7.17e-08 5.44e-08 2.15e-07 5.21e-08 1.43e-08 3.4e-08 1.01e-08 1.2e-07 3.8e-09 4.88e-08
ENSG00000169403 PTAFR 61461 7.86e-06 9.04e-06 7.62e-07 3.42e-06 1.06e-06 1.71e-06 7.61e-06 9.76e-07 5.1e-06 2.5e-06 7.96e-06 3.18e-06 9.55e-06 1.94e-06 9.99e-07 2.78e-06 1.97e-06 3.49e-06 1.33e-06 1.04e-06 3.06e-06 5.42e-06 4.51e-06 1.56e-06 8.59e-06 1.95e-06 2.35e-06 1.57e-06 4.95e-06 4.26e-06 2.89e-06 3.98e-07 7.75e-07 1.96e-06 2.13e-06 9.54e-07 9.25e-07 4.67e-07 1.25e-06 3.63e-07 2.88e-07 6.65e-06 6.31e-07 1.99e-07 3.51e-07 6.92e-07 7.12e-07 2.39e-07 2.87e-07