Genes within 1Mb (chr1:28242638:C:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000000938 FGR 607453 eQTL 8.50e-02 0.0315 0.0183 0.00133 0.0 0.0859
ENSG00000060656 PTPRU -993878 eQTL 2.36e-02 -0.11 0.0487 0.0 0.0 0.0859
ENSG00000117748 RPA2 327892 eQTL 3.29e-02 -0.063 0.0295 0.00107 0.0 0.0859
ENSG00000117758 STX12 469419 eQTL 6.29e-02 0.0445 0.0239 0.00128 0.0 0.0859
ENSG00000126698 DNAJC8 9609 eQTL 2.41e-30 -0.293 0.0247 0.0199 0.0217 0.0859
ENSG00000130766 SESN2 -16880 eQTL 1.47e-02 -0.0515 0.0211 0.00647 0.0052 0.0859
ENSG00000130770 ATP5IF1 6529 pQTL 5.61e-08 0.116 0.0213 0.00125 0.0 0.091
ENSG00000130770 ATP5IF1 6529 eQTL 4.53e-33 -0.356 0.0286 0.00888 0.00774 0.0859
ENSG00000180098 TRNAU1AP -310447 eQTL 2.94e-02 -0.0674 0.0309 0.0 0.0 0.0859
ENSG00000204138 PHACTR4 -126944 eQTL 8.23e-06 -0.152 0.0339 0.00108 0.0 0.0859
ENSG00000235912 AL031729.1 593219 eQTL 2.22e-01 0.0767 0.0628 0.00102 0.0 0.0859
ENSG00000242125 SNHG3 -263342 eQTL 2.55e-03 0.056 0.0185 0.00146 0.0 0.0859
ENSG00000270605 AL353622.1 1185 eQTL 6.40e-04 -0.154 0.045 0.00483 0.00295 0.0859
ENSG00000271398 AL353622.2 -4506 eQTL 7.19e-05 -0.193 0.0484 0.0114 0.0099 0.0859
ENSG00000279443 AL513497.1 -301822 eQTL 4.82e-02 0.122 0.0616 0.00172 0.0 0.0859


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -993878 2.56e-07 1.11e-07 3.34e-08 1.65e-07 1.02e-07 9.14e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.59e-07 7.49e-08 1.19e-07 6.1e-08 4.77e-08 7.4e-08 5.15e-08 1.02e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.52e-08 2.75e-08 8.09e-08 1.01e-07 4.26e-08 4.85e-08 8.28e-08 8.3e-08 3.69e-08 4.02e-08 1.42e-07 4.34e-08 1.71e-08 1.09e-07 1.83e-08 1.5e-07 4.7e-09 4.61e-08
ENSG00000126698 DNAJC8 9609 3.32e-05 3.34e-05 6.12e-06 1.56e-05 5.1e-06 1.36e-05 4.02e-05 4.24e-06 2.98e-05 1.42e-05 3.66e-05 1.7e-05 4.7e-05 1.36e-05 6.39e-06 1.63e-05 1.63e-05 2.39e-05 7.5e-06 6.6e-06 1.38e-05 2.96e-05 3.03e-05 8.13e-06 4.24e-05 7.46e-06 1.27e-05 1.14e-05 2.98e-05 2.4e-05 1.92e-05 1.63e-06 2.41e-06 6.67e-06 1.15e-05 5.23e-06 2.93e-06 3.18e-06 4.48e-06 3.11e-06 1.7e-06 3.78e-05 3.34e-06 3.6e-07 2.1e-06 3.47e-06 3.97e-06 1.48e-06 1.52e-06
ENSG00000130770 ATP5IF1 6529 3.63e-05 3.34e-05 6.39e-06 1.58e-05 5.8e-06 1.42e-05 4.44e-05 4.49e-06 3.16e-05 1.53e-05 3.84e-05 1.78e-05 4.85e-05 1.42e-05 6.95e-06 1.86e-05 1.77e-05 2.54e-05 7.83e-06 6.75e-06 1.5e-05 3.3e-05 3.24e-05 8.8e-06 4.44e-05 7.99e-06 1.41e-05 1.28e-05 3.19e-05 2.53e-05 2.03e-05 1.64e-06 2.56e-06 7.07e-06 1.19e-05 5.68e-06 3.13e-06 3.17e-06 4.65e-06 3.28e-06 1.74e-06 3.89e-05 3.63e-06 3.55e-07 2.39e-06 3.81e-06 4.07e-06 1.56e-06 1.52e-06
ENSG00000180098 TRNAU1AP -310447 3.71e-07 2.5e-07 7.45e-08 2.79e-07 1.01e-07 1.25e-07 2.63e-07 5.75e-08 1.54e-07 8.53e-08 1.61e-07 1.31e-07 2.24e-07 8.07e-08 9.33e-08 8.71e-08 4.18e-08 1.72e-07 7.27e-08 6.58e-08 1.26e-07 1.7e-07 1.64e-07 4.15e-08 2.28e-07 1.39e-07 1.29e-07 1.04e-07 1.32e-07 1.05e-07 1.26e-07 5.22e-08 3.65e-08 1.02e-07 5.65e-08 3.5e-08 7.86e-08 7.25e-08 5.78e-08 8.03e-08 5.8e-08 1.6e-07 2.67e-08 6.41e-08 3.2e-08 9.65e-09 8.81e-08 0.0 4.52e-08
ENSG00000204138 PHACTR4 -126944 4.33e-06 4.68e-06 4.5e-07 2.32e-06 4.59e-07 8.44e-07 2.43e-06 4.95e-07 1.92e-06 1.01e-06 2.6e-06 1.63e-06 4.6e-06 1.39e-06 8.99e-07 1.54e-06 1.06e-06 2.25e-06 1.09e-06 1.41e-06 1.11e-06 3.09e-06 2.51e-06 1.01e-06 4.08e-06 1.35e-06 1.42e-06 1.45e-06 1.95e-06 1.66e-06 2.01e-06 3.82e-07 5.03e-07 1.26e-06 1.51e-06 6.58e-07 7.95e-07 4.39e-07 9.37e-07 3.33e-07 2.56e-07 3.84e-06 4.11e-07 1.86e-07 3.07e-07 3.57e-07 6.26e-07 2.19e-07 2.97e-07
ENSG00000233427 \N -634698 2.6e-07 1.06e-07 3.35e-08 1.76e-07 9.91e-08 9.36e-08 1.39e-07 5.24e-08 1.32e-07 4.23e-08 1.61e-07 7.6e-08 1.21e-07 6.07e-08 5.44e-08 7.76e-08 5.12e-08 1.06e-07 5.22e-08 3.74e-08 1.03e-07 1.31e-07 1.31e-07 4.98e-08 1.32e-07 1.09e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.84e-08 2.74e-08 8.02e-08 9.41e-08 3.93e-08 4.75e-08 9.2e-08 8.3e-08 3.05e-08 2.99e-08 1.4e-07 4.01e-08 7.18e-09 9.21e-08 1.75e-08 1.37e-07 4.26e-09 4.91e-08
ENSG00000271398 AL353622.2 -4506 3.75e-05 3.37e-05 6.4e-06 1.58e-05 5.94e-06 1.46e-05 4.59e-05 4.65e-06 3.23e-05 1.58e-05 3.92e-05 1.79e-05 4.89e-05 1.45e-05 7.12e-06 1.94e-05 1.84e-05 2.61e-05 7.94e-06 6.77e-06 1.59e-05 3.41e-05 3.3e-05 9.15e-06 4.56e-05 8.26e-06 1.46e-05 1.3e-05 3.31e-05 2.59e-05 2.07e-05 1.64e-06 2.57e-06 7.08e-06 1.19e-05 5.85e-06 3.16e-06 3.15e-06 4.75e-06 3.35e-06 1.74e-06 3.92e-05 3.68e-06 3.62e-07 2.55e-06 3.93e-06 4.14e-06 1.61e-06 1.52e-06