Genes within 1Mb (chr1:28238254:CACAG:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000000938 FGR 603069 eQTL 7.51e-02 0.0325 0.0182 0.00138 0.0 0.0864
ENSG00000060656 PTPRU -998262 eQTL 2.54e-02 -0.109 0.0486 0.0 0.0 0.0864
ENSG00000117748 RPA2 323508 eQTL 2.70e-02 -0.0652 0.0294 0.00113 0.0 0.0864
ENSG00000117758 STX12 465035 eQTL 6.04e-02 0.0449 0.0239 0.00131 0.0 0.0864
ENSG00000126698 DNAJC8 5225 eQTL 2.41e-30 -0.293 0.0247 0.0217 0.0216 0.0864
ENSG00000130766 SESN2 -21264 eQTL 1.19e-02 -0.053 0.021 0.00831 0.00738 0.0864
ENSG00000130770 ATP5IF1 2145 pQTL 3.88e-08 0.117 0.0212 0.00165 0.00138 0.0914
ENSG00000130770 ATP5IF1 2145 eQTL 2.96e-33 -0.356 0.0285 0.0153 0.0136 0.0864
ENSG00000180098 TRNAU1AP -314831 eQTL 3.29e-02 -0.0659 0.0308 0.0 0.0 0.0864
ENSG00000204138 PHACTR4 -131328 eQTL 8.74e-06 -0.151 0.0339 0.00107 0.0 0.0864
ENSG00000242125 SNHG3 -267726 eQTL 2.58e-03 0.0559 0.0185 0.00146 0.0 0.0864
ENSG00000270605 AL353622.1 -3199 eQTL 5.43e-04 -0.156 0.045 0.00558 0.00341 0.0864
ENSG00000271398 AL353622.2 -8890 eQTL 7.14e-05 -0.193 0.0484 0.0116 0.00997 0.0864
ENSG00000279443 AL513497.1 -306206 eQTL 6.43e-02 0.114 0.0615 0.00148 0.0 0.0864


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000060656 PTPRU -998262 2.64e-07 1.01e-07 3.41e-08 1.67e-07 1.03e-07 9.05e-08 1.36e-07 5.29e-08 1.33e-07 3.99e-08 1.59e-07 7.4e-08 1.2e-07 6.07e-08 4.48e-08 7.76e-08 5.15e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.09e-08 1.01e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.42e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08
ENSG00000126698 DNAJC8 5225 0.000212 0.000169 1.91e-05 2.11e-05 6.9e-06 3.04e-05 9.74e-05 4.96e-06 7.56e-05 2.4e-05 8.35e-05 3.22e-05 0.000127 4.31e-05 1.73e-05 5.38e-05 5.11e-05 4.2e-05 1.06e-05 8.3e-06 2.63e-05 0.000107 7.45e-05 1.45e-05 0.00013 1.58e-05 3.64e-05 2.33e-05 8.22e-05 3.34e-05 3.9e-05 1.64e-06 4.67e-06 1.78e-05 1.61e-05 7.17e-06 3.39e-06 3.17e-06 7.03e-06 3.36e-06 1.71e-06 0.000176 1.85e-05 5.03e-07 5.6e-06 4.65e-06 6.69e-06 1.47e-06 1.51e-06
ENSG00000130770 ATP5IF1 2145 0.000296 0.000302 3.34e-05 4.88e-05 1.9e-05 5.21e-05 0.000182 1.3e-05 0.000158 6.51e-05 0.000183 9.17e-05 0.000274 8.26e-05 3.96e-05 0.000131 9.41e-05 0.000112 2.98e-05 1.65e-05 6.51e-05 0.000233 0.000141 3.95e-05 0.000268 4.62e-05 9.58e-05 4.95e-05 0.000149 5.68e-05 9.17e-05 5.64e-06 5.87e-06 2.63e-05 2.94e-05 1.29e-05 7.97e-06 5.99e-06 1.38e-05 6.13e-06 2.6e-06 0.000318 2.55e-05 1.02e-06 1.29e-05 1.4e-05 1.78e-05 4.11e-06 3.15e-06
ENSG00000180098 TRNAU1AP -314831 2.91e-06 3.66e-06 2.62e-07 6.38e-07 1.13e-07 6.58e-07 1.13e-06 5.85e-08 6.53e-07 1.7e-07 1.09e-06 3.27e-07 1.83e-06 3.9e-07 4.34e-07 7.3e-07 7.94e-07 4.4e-07 9.71e-08 4.92e-08 2.52e-07 8.58e-07 4.77e-07 1.25e-07 1.92e-06 2.7e-07 2.57e-07 1.97e-07 6.33e-07 6.42e-07 3.38e-07 3.76e-08 4.16e-08 2.19e-07 3.29e-07 4.6e-08 5.61e-08 9.23e-08 6.76e-08 4.24e-08 3.82e-08 1.29e-06 6.17e-08 1.23e-08 3.41e-08 1.22e-08 9.1e-08 4.2e-09 4.74e-08
ENSG00000204138 PHACTR4 -131328 9.14e-06 9.31e-06 7.63e-07 3.5e-06 4.85e-07 1.54e-06 3.08e-06 3.49e-07 2.43e-06 7.18e-07 3.13e-06 1.43e-06 7.77e-06 1.75e-06 9.86e-07 2e-06 1.84e-06 2.15e-06 5.75e-07 6.56e-07 1.14e-06 3.5e-06 3.44e-06 1.04e-06 5.08e-06 1.05e-06 1.06e-06 1.68e-06 3.85e-06 2.46e-06 1.75e-06 4.4e-08 5.76e-07 1.71e-06 1.8e-06 9.46e-07 7.14e-07 2.79e-07 7.38e-07 3.75e-07 1.45e-07 5.69e-06 1.28e-06 2.5e-07 2.85e-07 4.99e-07 8.41e-07 9.04e-08 5.44e-08
ENSG00000233427 \N -639082 5.14e-07 3.12e-07 3.65e-08 1.82e-07 1.02e-07 9.48e-08 1.44e-07 5.29e-08 1.42e-07 4.23e-08 1.56e-07 7.6e-08 1.33e-07 7.13e-08 5.14e-08 7.26e-08 3.88e-08 1.1e-07 5.12e-08 2.88e-08 1.06e-07 1.27e-07 1.3e-07 5.01e-08 1.31e-07 1.13e-07 1.1e-07 8.49e-08 9.97e-08 1.1e-07 9.58e-08 3.29e-08 2.75e-08 8.25e-08 8.87e-08 4.14e-08 4.01e-08 8.48e-08 8.48e-08 3.87e-08 2.6e-08 1.31e-07 3.93e-08 0.0 1.12e-07 1.8e-08 1.46e-07 4.96e-09 4.72e-08
ENSG00000271398 AL353622.2 -8890 0.000187 0.000112 1.16e-05 1.55e-05 3.83e-06 2.06e-05 6.08e-05 2.92e-06 4.4e-05 1.27e-05 4.51e-05 1.85e-05 7.04e-05 2.41e-05 9.24e-06 2.6e-05 3.11e-05 2.48e-05 6.64e-06 4.89e-06 1.32e-05 6.04e-05 4.62e-05 8.51e-06 7.2e-05 7.8e-06 1.78e-05 1.26e-05 4.93e-05 2.45e-05 2.03e-05 1.06e-06 2.61e-06 9.8e-06 1.04e-05 4.68e-06 1.76e-06 2.45e-06 4.29e-06 1.97e-06 1.19e-06 0.00011 1.56e-05 4.38e-07 2.88e-06 2.64e-06 4.08e-06 7.2e-07 4.58e-07